JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NUMA1_chr11_71997864_72085542	1/1	a0001	2115	193	58	31	77	6	19	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0002	2115	13	0	2	4	0	7	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0003	2115	11	10	1	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0004	2115	5	0	3	2	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0005	2115	3	0	0	3	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0006	2115	3	3	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0007	2115	1	0	0	1	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0008	2115	1	0	0	1	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0009	2115	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0010	2115	1	0	1	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0011	2115	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0012	2108	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0013	2115	1	0	0	1	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0014	2115	1	0	0	0	0	1	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0015	2115	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0016	1937	1	0	0	1	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0017	2115	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0018	2115	1	0	0	0	0	1	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0019	2115	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0020	2115	1	0	0	1	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0021	2115	1	0	0	1	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMA1_chr11_71997864_72085542	0/0	a0022	2115	1	1	0	0	0	0	copy fasta	NUMA1	chr11	71997864	72085542
NUMBL_chr19_40660905_40695651	0/1	a0001	607	286	84	43	122	9	27	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	1/0	a0002	609	115	2	27	69	3	13	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	a0003	607	6	6	0	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	a0004	607	1	1	0	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	a0005	478	1	0	0	1	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	a0006	603	1	0	1	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	a0007	607	1	0	1	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	a0008	607	1	0	0	1	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	a0009	607	1	1	0	0	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMBL_chr19_40660905_40695651	0/0	a0010	609	1	0	0	1	0	0	copy fasta	NUMBL	chr19	40660905	40695651
NUMB_chr14_73270216_73463546	1/1	a0001	651	321	88	62	116	8	45	copy fasta	NUMB	chr14	73270216	73463546
NUMB_chr14_73270216_73463546	0/0	a0002	651	1	0	0	0	0	1	copy fasta	NUMB	chr14	73270216	73463546
NUP107_chr12_68681978_68750809	1/1	a0001	925	392	79	60	202	18	31	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	a0002	925	1	0	1	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	a0003	925	1	0	0	0	0	1	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	a0004	925	1	1	0	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	a0005	925	1	0	1	0	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	a0006	925	1	0	0	1	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP107_chr12_68681978_68750809	0/0	a0007	925	1	0	0	1	0	0	copy fasta	NUP107	chr12	68681978	68750809
NUP133_chr1_229435259_229513341	1/0	a0001	1156	163	30	33	69	9	21	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/1	a0002	1156	49	13	12	18	2	3	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	a0003	1156	35	31	2	1	1	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	a0004	1156	14	0	13	0	0	1	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	a0005	1156	8	8	0	0	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	a0006	1156	2	2	0	0	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	a0007	1156	2	0	0	0	0	2	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	a0008	1156	1	1	0	0	0	0	copy fasta	NUP133	chr1	229435259	229513341
NUP133_chr1_229435259_229513341	0/0	a0009	1156	1	1	0	0	0	0	copy fasta	NUP133	chr1	229435259	229513341