JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NUP133_chr1_229435259_229513341	0/0	a0010	1156	1	0	0	0	0	1	copy fasta	NUP133	chr1	229435259	229513341
NUP153_chr6_17610037_17711925	0/0	a0001	1475	131	31	20	69	1	10	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	a0002	1475	59	15	2	40	0	2	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	1/0	a0003	1475	36	20	6	4	2	3	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	a0004	1475	29	2	10	11	4	2	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/1	a0005	1475	20	1	5	10	1	2	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	a0006	1475	19	5	7	1	4	2	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	a0007	1475	9	9	0	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	a0008	1475	2	1	1	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	a0009	1475	1	0	0	1	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	a0010	1475	1	0	1	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	a0011	1475	1	0	1	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	a0012	1475	1	1	0	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	a0013	1475	1	0	0	0	0	1	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	a0014	1475	1	0	0	0	1	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	a0015	1475	1	0	0	0	1	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	a0016	1475	1	1	0	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	a0017	1475	1	0	0	0	0	1	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	a0018	1475	1	0	1	0	0	0	copy fasta	NUP153	chr6	17610037	17711925
NUP153_chr6_17610037_17711925	0/0	a0019	1475	1	0	0	0	0	1	copy fasta	NUP153	chr6	17610037	17711925
NUP155_chr5_37283137_37376106	1/1	a0001	1391	290	81	49	114	12	32	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	a0002	1391	2	0	0	2	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	a0003	1391	2	0	2	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	a0004	1391	1	0	0	1	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	a0005	1391	1	0	0	1	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	a0006	1391	1	1	0	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	a0007	1391	1	0	1	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	a0008	1391	1	0	1	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP155_chr5_37283137_37376106	0/0	a0009	1391	1	0	1	0	0	0	copy fasta	NUP155	chr5	37283137	37376106
NUP160_chr11_47773118_47853350	1/1	a0001	1402	232	76	31	94	7	22	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	a0002	1402	84	8	27	26	5	18	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	a0003	1402	14	0	0	14	0	0	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	a0004	1402	2	0	2	0	0	0	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	a0005	1402	2	0	0	2	0	0	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	a0006	1402	1	0	0	1	0	0	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	a0007	1402	1	0	1	0	0	0	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	a0008	1402	1	0	1	0	0	0	copy fasta	NUP160	chr11	47773118	47853350
NUP160_chr11_47773118_47853350	0/0	a0009	359	1	0	0	1	0	0	copy fasta	NUP160	chr11	47773118	47853350
NUP188_chr9_128942699_129012096	1/1	a0001	1749	275	66	56	108	12	31	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	a0002	1749	6	5	1	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	a0003	1749	4	4	0	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	a0004	1749	2	0	2	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	a0005	1749	1	0	0	0	1	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	a0006	1749	1	0	0	0	0	1	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	a0007	1749	1	0	0	0	0	1	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	a0008	1749	1	0	0	0	0	1	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	a0009	1749	1	0	0	1	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	a0010	1749	1	0	0	0	1	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	a0011	1749	1	1	0	0	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP188_chr9_128942699_129012096	0/0	a0012	1749	1	0	1	0	0	0	copy fasta	NUP188	chr9	128942699	129012096