JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NUP188_chr9_128942699_129012096	0/0	a0013	1749	1	0	0	1	0	0	copy fasta	NUP188	chr9	128942699	129012096
NUP205_chr7_135552917_135653753	0/1	a0001	2012	309	75	56	132	11	34	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	a0002	2012	26	4	3	11	1	7	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	1/0	a0003	2012	5	4	0	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	a0004	2012	2	0	0	0	2	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	a0005	2012	2	0	0	2	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	a0006	2012	1	0	0	1	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	a0007	2012	1	1	0	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	a0008	2012	1	0	1	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	a0009	2012	1	0	0	1	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	a0010	2012	1	0	0	1	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	a0011	2012	1	0	0	0	0	1	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	a0012	2012	1	1	0	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP205_chr7_135552917_135653753	0/0	a0013	2012	1	1	0	0	0	0	copy fasta	NUP205	chr7	135552917	135653753
NUP210L_chr1_153987690_154160073	1/1	a0001	1888	194	60	29	75	7	21	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	a0002	1888	72	12	14	38	1	7	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	a0003	1888	7	6	1	0	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	a0004	1888	4	0	4	0	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	a0005	1888	2	0	0	2	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	a0006	1888	2	0	0	0	0	2	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	a0007	1888	1	0	0	0	0	1	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	a0008	1888	1	0	0	0	0	1	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	a0009	1888	1	0	0	1	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	a0010	1888	1	0	1	0	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	a0011	1888	1	0	0	1	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	a0012	1888	1	0	0	1	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	a0013	1888	1	0	1	0	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	a0014	1888	1	1	0	0	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210L_chr1_153987690_154160073	0/0	a0015	1888	1	1	0	0	0	0	copy fasta	NUP210L	chr1	153987690	154160073
NUP210_chr3_13311235_13425322	0/1	a0001	1887	105	9	21	56	6	12	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0002	1887	86	16	16	45	3	6	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0003	1887	33	28	2	1	0	2	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0004	1887	29	9	1	14	2	3	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0005	1887	29	4	10	4	1	10	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0006	1887	16	8	7	0	1	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0007	1887	4	0	1	3	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0008	1887	3	3	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0009	1887	3	3	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0010	1887	2	0	0	2	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0011	1887	2	1	0	0	0	1	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0012	1887	2	0	2	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0013	1887	1	0	0	1	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	1/0	a0014	1887	1	0	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0015	1887	1	0	0	1	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0016	1887	1	0	0	0	0	1	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0017	1887	1	0	0	1	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0018	1887	1	0	0	0	0	1	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0019	1887	1	0	0	1	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0020	1887	1	1	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0021	1887	1	1	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322