JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NUP210_chr3_13311235_13425322	0/0	a0022	1887	1	1	0	0	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0023	1887	1	0	0	0	1	0	copy fasta	NUP210	chr3	13311235	13425322
NUP210_chr3_13311235_13425322	0/0	a0024	1887	1	0	0	1	0	0	copy fasta	NUP210	chr3	13311235	13425322
NUP214_chr9_131120586_131239663	0/1	a0001	2090	112	31	22	39	5	14	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	1/0	a0002	2090	98	21	17	40	3	16	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	a0003	2090	5	2	0	0	0	3	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	a0004	2090	3	0	0	3	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	a0005	2090	3	3	0	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	a0006	2090	3	2	1	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	a0007	2090	1	1	0	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	a0008	2090	1	0	0	1	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	a0009	2090	1	0	0	1	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	a0010	2090	1	1	0	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	a0011	2090	1	0	0	0	0	1	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	a0012	2090	1	1	0	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	a0013	2090	1	1	0	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	a0014	2090	1	0	0	1	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	a0015	2090	1	1	0	0	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP214_chr9_131120586_131239663	0/0	a0016	2090	1	0	0	1	0	0	copy fasta	NUP214	chr9	131120586	131239663
NUP35_chr2_183119443_183166680	1/1	a0001	326	401	87	62	192	18	40	copy fasta	NUP35	chr2	183119443	183166680
NUP35_chr2_183119443_183166680	0/0	a0002	326	1	1	0	0	0	0	copy fasta	NUP35	chr2	183119443	183166680
NUP37_chr12_102068103_102125114	1/1	a0001	326	395	92	68	180	16	37	copy fasta	NUP37	chr12	102068103	102125114
NUP37_chr12_102068103_102125114	0/0	a0002	326	1	0	0	1	0	0	copy fasta	NUP37	chr12	102068103	102125114
NUP37_chr12_102068103_102125114	0/0	a0003	326	1	0	0	0	0	1	copy fasta	NUP37	chr12	102068103	102125114
NUP37_chr12_102068103_102125114	0/0	a0004	326	1	0	0	1	0	0	copy fasta	NUP37	chr12	102068103	102125114
NUP42_chr7_23177048_23206006	1/1	a0001	423	331	74	51	152	12	40	copy fasta	NUP42	chr7	23177048	23206006
NUP42_chr7_23177048_23206006	0/0	a0002	423	17	14	3	0	0	0	copy fasta	NUP42	chr7	23177048	23206006
NUP42_chr7_23177048_23206006	0/0	a0003	423	12	0	6	0	2	4	copy fasta	NUP42	chr7	23177048	23206006
NUP42_chr7_23177048_23206006	0/0	a0004	427	3	0	3	0	0	0	copy fasta	NUP42	chr7	23177048	23206006
NUP42_chr7_23177048_23206006	0/0	a0005	423	1	0	1	0	0	0	copy fasta	NUP42	chr7	23177048	23206006
NUP43_chr6_149719315_149751529	0/0	a0000	0	1	0	0	1	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	1/1	a0001	380	317	75	66	125	10	39	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	a0002	380	8	8	0	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	a0003	380	1	0	0	0	0	1	copy fasta	NUP43	chr6	149719315	149751529
NUP43_chr6_149719315_149751529	0/0	a0004	380	1	1	0	0	0	0	copy fasta	NUP43	chr6	149719315	149751529
NUP50_chr22_45158925_45193017	1/1	a0001	468	429	97	80	191	16	43	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	a0002	468	1	1	0	0	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	a0003	468	1	0	0	0	0	1	copy fasta	NUP50	chr22	45158925	45193017
NUP50_chr22_45158925_45193017	0/0	a0004	468	1	0	0	1	0	0	copy fasta	NUP50	chr22	45158925	45193017
NUP54_chr4_76109664_76153397	1/1	a0001	507	240	57	43	103	12	23	copy fasta	NUP54	chr4	76109664	76153397
NUP54_chr4_76109664_76153397	0/0	a0002	508	85	5	12	61	1	6	copy fasta	NUP54	chr4	76109664	76153397
NUP54_chr4_76109664_76153397	0/0	a0003	507	43	22	13	3	3	2	copy fasta	NUP54	chr4	76109664	76153397
NUP54_chr4_76109664_76153397	0/0	a0004	508	1	0	0	1	0	0	copy fasta	NUP54	chr4	76109664	76153397
NUP54_chr4_76109664_76153397	0/0	a0005	508	1	0	0	0	0	1	copy fasta	NUP54	chr4	76109664	76153397
NUP58_chr13_25296625_25347421	1/0	a0001	599	223	71	39	79	11	22	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	a0002	599	115	11	17	70	5	12	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	a0003	599	7	7	0	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/1	a0004	599	2	0	1	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	a0005	599	1	1	0	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP58_chr13_25296625_25347421	0/0	a0006	595	1	0	0	1	0	0	copy fasta	NUP58	chr13	25296625	25347421