JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NUP58_chr13_25296625_25347421	0/0	a0007	599	1	0	1	0	0	0	copy fasta	NUP58	chr13	25296625	25347421
NUP62CL_chrX_107118427_107211433	0/1	a0001	184	152	63	19	61	2	6	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62CL_chrX_107118427_107211433	1/0	a0002	184	124	4	24	72	7	16	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62CL_chrX_107118427_107211433	0/0	a0003	184	2	2	0	0	0	0	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62CL_chrX_107118427_107211433	0/0	a0004	184	1	1	0	0	0	0	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62CL_chrX_107118427_107211433	0/0	a0005	184	1	0	0	1	0	0	copy fasta	NUP62CL	chrX	107118427	107211433
NUP62_chr19_49901825_49934504	1/1	a0001	522	251	61	53	95	5	35	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	a0002	522	125	22	24	65	5	9	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	a0003	522	22	2	1	18	0	1	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	a0004	523	6	6	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	a0005	522	3	0	0	3	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	a0006	522	2	0	0	2	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	a0007	522	1	1	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	a0008	522	1	1	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	a0009	522	1	0	0	1	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	a0010	522	1	1	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	a0011	522	1	1	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	a0012	522	1	1	0	0	0	0	copy fasta	NUP62	chr19	49901825	49934504
NUP62_chr19_49901825_49934504	0/0	a0013	522	1	0	0	0	0	1	copy fasta	NUP62	chr19	49901825	49934504
NUP85_chr17_75200679_75240758	1/1	a0001	656	271	91	61	64	13	40	copy fasta	NUP85	chr17	75200679	75240758
NUP85_chr17_75200679_75240758	0/0	a0002	656	1	0	0	0	0	1	copy fasta	NUP85	chr17	75200679	75240758
NUP85_chr17_75200679_75240758	0/0	a0003	656	1	0	0	0	1	0	copy fasta	NUP85	chr17	75200679	75240758
NUP85_chr17_75200679_75240758	0/0	a0004	656	1	1	0	0	0	0	copy fasta	NUP85	chr17	75200679	75240758
NUP85_chr17_75200679_75240758	0/0	a0005	656	1	0	0	0	0	1	copy fasta	NUP85	chr17	75200679	75240758
NUP85_chr17_75200679_75240758	0/0	a0006	656	1	0	1	0	0	0	copy fasta	NUP85	chr17	75200679	75240758
NUP88_chr17_5379833_5424662	1/1	a0001	741	359	85	66	148	16	42	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	a0002	741	3	0	3	0	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	a0003	741	2	0	2	0	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	a0004	741	1	0	0	1	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	a0005	741	1	1	0	0	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	a0006	741	1	0	0	1	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	a0007	741	1	0	1	0	0	0	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	a0008	741	1	0	0	0	0	1	copy fasta	NUP88	chr17	5379833	5424662
NUP88_chr17_5379833_5424662	0/0	a0009	741	1	0	0	0	0	1	copy fasta	NUP88	chr17	5379833	5424662
NUP93_chr16_56725129_56855286	1/1	a0001	819	366	87	65	161	14	37	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	a0002	819	4	0	0	4	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	a0003	819	1	1	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	a0004	819	1	0	0	0	0	1	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	a0005	819	1	0	0	1	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	a0006	819	1	1	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	a0007	819	1	1	0	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	a0008	819	1	0	0	0	0	1	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	a0009	819	1	0	1	0	0	0	copy fasta	NUP93	chr16	56725129	56855286
NUP93_chr16_56725129_56855286	0/0	a0010	819	1	0	0	0	0	1	copy fasta	NUP93	chr16	56725129	56855286
NUP98_chr11_3670019_3802554	1/1	a0001	1800	297	75	39	145	5	31	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	a0002	1800	10	0	7	0	1	2	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	a0003	1800	6	6	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	a0004	1800	4	0	0	4	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	a0005	1800	3	3	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	a0006	1800	3	3	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554