JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NUP98_chr11_3670019_3802554	0/0	a0007	1800	2	0	0	2	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	a0008	1800	2	0	0	0	0	2	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	a0009	1800	2	0	2	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	a0010	1800	2	0	0	2	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	a0011	1800	1	1	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	a0012	1800	1	1	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	a0013	1800	1	0	0	1	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	a0014	1800	1	0	1	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	a0015	1800	1	0	0	1	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	a0016	1800	1	0	1	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	a0017	1800	1	1	0	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	a0018	1800	1	0	0	0	0	1	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	a0019	1800	1	0	1	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	a0020	1800	1	0	1	0	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUP98_chr11_3670019_3802554	0/0	a0021	1800	1	0	0	1	0	0	copy fasta	NUP98	chr11	3670019	3802554
NUPR1_chr16_28527708_28543974	1/1	a0001	82	366	84	72	164	12	32	copy fasta	NUPR1	chr16	28527708	28543974
NUPR1_chr16_28527708_28543974	0/0	a0002	82	2	0	0	2	0	0	copy fasta	NUPR1	chr16	28527708	28543974
NUPR2_chr7_56109681_56121417	1/1	a0001	97	446	95	80	207	18	44	copy fasta	NUPR2	chr7	56109681	56121417
NUPR2_chr7_56109681_56121417	0/0	a0002	97	1	0	0	1	0	0	copy fasta	NUPR2	chr7	56109681	56121417
NUPR2_chr7_56109681_56121417	0/0	a0003	97	1	1	0	0	0	0	copy fasta	NUPR2	chr7	56109681	56121417
NUS1_chr6_117670469_117715727	1/1	a0001	293	420	96	68	194	16	44	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	a0002	293	5	0	0	5	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	a0003	293	3	0	0	3	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUS1_chr6_117670469_117715727	0/0	a0004	293	2	0	2	0	0	0	copy fasta	NUS1	chr6	117670469	117715727
NUSAP1_chr15_41327881_41386046	1/1	a0001	441	175	32	32	71	6	32	copy fasta	NUSAP1	chr15	41327881	41386046
NUSAP1_chr15_41327881_41386046	0/0	a0002	441	110	44	22	24	8	12	copy fasta	NUSAP1	chr15	41327881	41386046
NUSAP1_chr15_41327881_41386046	0/0	a0003	441	6	4	2	0	0	0	copy fasta	NUSAP1	chr15	41327881	41386046
NUSAP1_chr15_41327881_41386046	0/0	a0004	441	1	0	0	1	0	0	copy fasta	NUSAP1	chr15	41327881	41386046
NUTF2_chr16_67841933_67877567	1/1	a0001	127	248	84	52	72	6	32	copy fasta	NUTF2	chr16	67841933	67877567
NUTM1_chr15_34338315_34362735	0/1	a0001	1160	184	44	37	58	12	32	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0002	1160	76	0	18	52	1	5	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0003	1160	71	2	7	56	2	4	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	1/0	a0004	1160	38	35	2	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0005	1160	30	0	7	22	1	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0006	1160	10	0	1	9	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0007	1160	7	1	1	4	0	1	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0008	1160	6	6	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0009	1160	2	2	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0010	1160	2	0	0	0	0	2	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0011	1160	2	0	0	2	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0012	1160	2	1	1	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0013	1160	2	1	1	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0014	1160	2	2	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0015	1160	2	2	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0016	1160	1	0	1	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0017	1160	1	0	0	0	0	1	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0018	1160	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0019	1160	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0020	1160	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0021	1160	1	0	1	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735