JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NUTM1_chr15_34338315_34362735	0/0	a0022	1160	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0023	1160	1	1	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0024	1160	1	0	0	0	0	1	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0025	1138	1	1	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0026	1160	1	1	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0027	1160	1	1	0	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0028	1160	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0029	1160	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0030	1160	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0031	1160	1	0	1	0	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0032	1160	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM1_chr15_34338315_34362735	0/0	a0033	1160	1	0	0	1	0	0	copy fasta	NUTM1	chr15	34338315	34362735
NUTM2A_chr10_87220448_87239978	0/0	a0001	114	364	62	73	176	14	39	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	a0002	135	10	7	0	3	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	1/0	a0003	878	9	6	2	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	a0004	114	5	0	4	1	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	a0005	878	3	3	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	a0006	878	2	2	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	a0007	878	2	2	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	a0008	114	1	0	0	0	0	1	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	a0009	135	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	a0010	878	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	a0011	878	1	0	1	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	a0012	878	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	a0013	878	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	a0014	878	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2A_chr10_87220448_87239978	0/0	a0015	878	1	1	0	0	0	0	copy fasta	NUTM2A	chr10	87220448	87239978
NUTM2B_chr10_79698227_79717758	1/0	a0001	878	107	16	32	34	11	13	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0002	878	42	6	13	13	1	9	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0003	878	24	3	10	10	0	1	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0004	878	22	10	4	6	2	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0005	878	18	16	2	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0006	874	11	11	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0007	878	10	0	0	10	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0008	878	7	0	0	7	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0009	878	5	5	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0010	364	5	5	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0011	878	5	0	0	5	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0012	878	4	4	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0013	874	4	4	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0014	878	4	0	2	2	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0015	874	3	3	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0016	878	3	3	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0017	878	3	0	0	3	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0018	878	3	0	2	0	1	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0019	878	2	0	1	0	0	1	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0020	874	2	2	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0021	878	2	0	0	1	1	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0022	878	2	0	0	2	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0023	878	2	2	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758