JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NUTM2B_chr10_79698227_79717758	0/0	a0024	878	1	0	0	0	0	1	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0025	878	1	0	0	0	0	1	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0026	878	1	0	1	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0027	878	1	0	0	1	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0028	878	1	0	1	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0029	878	1	0	0	0	0	1	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0030	878	1	0	1	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0031	878	1	0	1	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0032	878	1	0	0	1	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0033	878	1	1	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0034	878	1	1	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0035	878	1	1	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0036	878	1	0	0	1	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0037	878	1	1	0	0	0	0	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2B_chr10_79698227_79717758	0/0	a0038	878	1	0	0	0	0	1	copy fasta	NUTM2B	chr10	79698227	79717758
NUTM2D_chr10_87352744_87372195	0/0	a0001	806	148	7	27	106	1	7	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0002	806	47	2	12	24	1	8	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0003	806	36	5	11	12	4	4	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0004	806	30	14	10	0	1	5	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0005	806	22	12	5	0	4	1	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0006	806	19	9	3	6	0	1	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0007	806	16	0	0	16	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0008	806	12	2	2	1	2	5	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0009	806	7	0	4	0	1	2	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0010	806	7	1	4	0	1	1	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0011	806	6	5	0	0	0	1	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0012	806	6	6	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0013	806	6	6	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0014	806	4	0	0	4	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0015	806	4	4	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0016	806	3	2	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0017	806	3	3	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0018	806	3	3	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0019	806	3	3	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	1/0	a0020	806	2	1	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0021	806	2	2	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0022	806	2	0	2	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0023	806	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0024	806	1	0	1	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0025	806	1	1	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0026	806	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0027	806	1	0	0	0	1	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0028	806	1	1	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0029	806	1	1	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0030	806	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0031	806	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0032	806	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0033	806	1	0	1	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0034	806	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0035	806	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195