JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NUTM2D_chr10_87352744_87372195	0/0	a0036	806	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0037	806	1	0	0	0	0	1	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0038	806	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0039	806	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0040	806	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0041	806	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0042	806	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0043	806	1	0	0	1	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0044	806	1	1	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0045	806	1	1	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0046	806	1	1	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0047	806	1	1	0	0	0	0	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0048	806	1	0	0	0	0	1	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2D_chr10_87352744_87372195	0/0	a0049	806	1	0	0	0	0	1	copy fasta	NUTM2D	chr10	87352744	87372195
NUTM2E_chr10_79821739_79855878	0/1	a0001	878	126	20	25	59	10	11	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0002	878	104	2	20	66	1	15	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0003	878	38	4	2	32	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0004	878	26	6	11	5	0	4	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0005	878	19	3	6	8	1	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	1/0	a0006	878	17	15	1	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0007	878	10	8	2	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0008	878	9	9	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0009	878	9	0	0	9	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0010	878	8	8	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0011	878	5	0	0	5	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0012	878	4	4	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0013	878	4	0	0	3	0	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0014	878	4	2	1	0	0	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0015	878	2	2	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0016	878	2	2	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0017	878	2	0	2	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0018	878	2	2	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0019	878	2	2	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0020	878	2	0	2	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0021	878	1	0	1	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0022	878	1	0	0	0	0	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0023	878	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0024	878	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0025	878	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0026	878	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0027	878	1	0	0	0	0	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0028	878	1	0	0	0	0	1	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0029	878	1	0	1	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0030	878	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0031	878	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0032	878	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0033	878	1	0	0	0	1	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0034	878	1	0	0	1	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0035	878	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2E_chr10_79821739_79855878	0/0	a0036	878	1	1	0	0	0	0	copy fasta	NUTM2E	chr10	79821739	79855878