JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NUTM2E_chr10_79821739_79855878	0/0	a0037	878	1	0	0	0	1	0	copy fasta	NUTM2E	chr10	79821739	79855878
NUTM2F_chr9_94313198_94333644	0/1	a0001	755	160	21	25	76	12	25	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0002	755	74	10	14	38	1	11	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	1/0	a0003	756	25	2	13	0	4	5	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0004	756	13	12	1	0	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0005	755	9	3	2	2	0	2	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0006	755	7	2	5	0	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0007	755	7	0	3	0	1	3	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0008	755	6	1	0	5	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0009	755	4	2	1	1	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0010	755	3	0	0	3	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0011	755	2	0	0	2	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0012	755	1	0	0	0	0	1	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0013	755	1	0	0	1	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0014	755	1	0	0	1	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0015	755	1	1	0	0	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0016	755	1	0	1	0	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0017	697	1	0	1	0	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0018	463	1	0	0	1	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0019	755	1	0	0	0	0	1	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0020	755	1	1	0	0	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0021	755	1	1	0	0	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0022	755	1	0	0	1	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2F_chr9_94313198_94333644	0/0	a0023	755	1	0	0	1	0	0	copy fasta	NUTM2F	chr9	94313198	94333644
NUTM2G_chr9_96923843_96944416	1/1	a0001	741	203	49	40	85	9	18	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0002	739	62	0	0	57	0	5	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0003	741	32	0	16	9	2	5	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0004	741	24	19	1	0	0	4	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0005	741	6	3	3	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0006	741	6	0	3	0	1	2	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0007	739	5	5	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0008	741	4	4	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0009	741	3	3	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0010	740	3	2	1	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0011	739	2	2	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0012	741	2	0	2	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0013	741	2	2	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0014	741	2	0	0	2	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0015	741	2	1	1	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0016	741	2	0	2	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0017	739	1	1	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0018	741	1	0	0	1	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0019	739	1	0	0	1	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0020	741	1	0	0	1	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0021	741	1	1	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0022	741	1	0	0	0	0	1	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0023	741	1	0	0	1	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0024	741	1	0	0	0	1	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0025	741	1	1	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0026	741	1	1	0	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416