JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NUTM2G_chr9_96923843_96944416	0/0	a0027	741	1	0	0	1	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0028	741	1	0	0	0	1	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0029	741	1	0	1	0	0	0	copy fasta	NUTM2G	chr9	96923843	96944416
NUTM2G_chr9_96923843_96944416	0/0	a0030	741	1	0	0	0	0	1	copy fasta	NUTM2G	chr9	96923843	96944416
NVL_chr1_224222345_224335172	1/1	a0001	856	270	82	47	90	14	35	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	a0002	856	7	0	0	7	0	0	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	a0003	856	2	0	1	0	0	1	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	a0004	856	1	0	0	0	0	1	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	a0005	856	1	0	0	0	0	1	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	a0006	856	1	1	0	0	0	0	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	a0007	856	1	1	0	0	0	0	copy fasta	NVL	chr1	224222345	224335172
NVL_chr1_224222345_224335172	0/0	a0008	856	1	0	0	1	0	0	copy fasta	NVL	chr1	224222345	224335172
NWD1_chr19_16714847_16822953	0/1	a0001	1432	62	1	10	43	5	2	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0002	1432	62	6	29	19	1	7	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0003	1432	41	2	11	14	3	11	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0004	1432	24	21	1	0	0	2	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0005	1432	21	0	6	8	2	5	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0006	1432	9	8	1	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0007	1432	6	6	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0008	1432	6	6	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0009	133	6	6	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0010	1432	5	3	2	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0011	1432	5	5	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0012	1432	4	4	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0013	1432	3	3	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0014	133	3	3	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0015	1432	3	0	0	3	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0016	1432	3	1	2	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0017	1432	3	3	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0018	1432	2	0	0	2	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0019	1432	2	2	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0020	1432	2	0	0	2	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0021	1432	2	0	2	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0022	1432	1	0	1	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	1/0	a0023	1432	1	0	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0024	1432	1	0	0	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0025	1432	1	0	0	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0026	1432	1	0	1	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0027	1432	1	0	0	0	0	1	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0028	1432	1	0	0	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0029	1432	1	0	0	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0030	1432	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0031	1432	1	0	0	0	0	1	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0032	1432	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0033	1432	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0034	1432	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0035	1432	1	0	0	1	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0036	1432	1	0	0	0	0	1	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0037	1432	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0038	1432	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953