JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NWD1_chr19_16714847_16822953	0/0	a0039	1432	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0040	1432	1	0	0	0	0	1	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0041	1432	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0042	1432	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0043	1432	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0044	1432	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0045	1432	1	0	0	0	1	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0046	1432	1	1	0	0	0	0	copy fasta	NWD1	chr19	16714847	16822953
NWD1_chr19_16714847_16822953	0/0	a0047	1432	1	0	0	0	0	1	copy fasta	NWD1	chr19	16714847	16822953
NWD2_chr4_37239743_37454463	1/1	a0001	1742	246	64	44	99	4	33	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	a0002	1742	37	11	7	9	4	6	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	a0003	1742	4	0	0	4	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	a0004	1742	2	0	0	0	0	2	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	a0005	1742	1	1	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	a0006	1742	1	0	1	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	a0007	1742	1	0	0	1	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	a0008	1742	1	1	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	a0009	1742	1	0	0	0	0	1	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	a0010	1742	1	0	0	1	0	0	copy fasta	NWD2	chr4	37239743	37454463
NWD2_chr4_37239743_37454463	0/0	a0011	1742	1	1	0	0	0	0	copy fasta	NWD2	chr4	37239743	37454463
NXF1_chr11_62787130_62810440	1/1	a0001	619	396	94	64	186	18	32	copy fasta	NXF1	chr11	62787130	62810440
NXF1_chr11_62787130_62810440	0/0	a0002	411	5	2	0	3	0	0	copy fasta	NXF1	chr11	62787130	62810440
NXF1_chr11_62787130_62810440	0/0	a0003	411	4	0	1	3	0	0	copy fasta	NXF1	chr11	62787130	62810440
NXF1_chr11_62787130_62810440	0/0	a0004	619	1	0	1	0	0	0	copy fasta	NXF1	chr11	62787130	62810440
NXF2B_chrX_102355395_102445008	0/0	a0001	626	54	9	7	34	1	3	copy fasta	NXF2B	chrX	102355395	102445008
NXF2_chrX_102242167_102331722	0/0	a0001	626	38	12	8	11	3	4	copy fasta	NXF2	chrX	102242167	102331722
NXF3_chrX_103070810_103098143	1/1	a0001	531	307	66	54	142	13	30	copy fasta	NXF3	chrX	103070810	103098143
NXF3_chrX_103070810_103098143	0/0	a0002	531	3	0	0	3	0	0	copy fasta	NXF3	chrX	103070810	103098143
NXF3_chrX_103070810_103098143	0/0	a0003	531	1	1	0	0	0	0	copy fasta	NXF3	chrX	103070810	103098143
NXF3_chrX_103070810_103098143	0/0	a0004	322	1	0	0	1	0	0	copy fasta	NXF3	chrX	103070810	103098143
NXF3_chrX_103070810_103098143	0/0	a0005	531	1	0	1	0	0	0	copy fasta	NXF3	chrX	103070810	103098143
NXF3_chrX_103070810_103098143	0/0	a0006	531	1	1	0	0	0	0	copy fasta	NXF3	chrX	103070810	103098143
NXNL1_chr19_17450425_17465926	0/0	a0000	0	1	1	0	0	0	0	copy fasta	NXNL1	chr19	17450425	17465926
NXNL1_chr19_17450425_17465926	1/1	a0001	212	353	76	60	162	11	42	copy fasta	NXNL1	chr19	17450425	17465926
NXNL1_chr19_17450425_17465926	0/0	a0002	212	30	0	7	17	3	3	copy fasta	NXNL1	chr19	17450425	17465926
NXNL1_chr19_17450425_17465926	0/0	a0003	212	17	11	1	0	0	5	copy fasta	NXNL1	chr19	17450425	17465926
NXNL1_chr19_17450425_17465926	0/0	a0004	212	6	6	0	0	0	0	copy fasta	NXNL1	chr19	17450425	17465926
NXNL1_chr19_17450425_17465926	0/0	a0005	212	1	0	0	1	0	0	copy fasta	NXNL1	chr19	17450425	17465926
NXNL2_chr9_88530178_88549973	1/1	a0001	156	328	92	54	138	8	34	copy fasta	NXNL2	chr9	88530178	88549973
NXNL2_chr9_88530178_88549973	0/0	a0002	156	7	7	0	0	0	0	copy fasta	NXNL2	chr9	88530178	88549973
NXNL2_chr9_88530178_88549973	0/0	a0003	156	1	1	0	0	0	0	copy fasta	NXNL2	chr9	88530178	88549973
NXN_chr17_794310_984776	1/1	a0001	435	238	59	52	81	6	38	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	a0002	435	2	2	0	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	a0003	435	1	1	0	0	0	0	copy fasta	NXN	chr17	794310	984776
NXN_chr17_794310_984776	0/0	a0004	427	1	0	0	1	0	0	copy fasta	NXN	chr17	794310	984776
NXPE1_chr11_114513934_114564881	0/0	a0001	547	134	15	19	77	7	16	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	1/1	a0002	547	122	14	28	60	5	13	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	a0003	547	74	48	16	0	1	9	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	a0004	547	6	5	1	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	a0005	547	5	5	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881