JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NXPE1_chr11_114513934_114564881	0/0	a0006	547	3	0	0	3	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	a0007	547	2	0	0	0	0	2	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	a0008	547	2	2	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	a0009	547	2	0	2	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	a0010	542	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	a0011	547	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	a0012	547	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	a0013	547	1	0	0	0	1	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	a0014	547	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	a0015	547	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	a0016	547	1	0	0	1	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	a0017	547	1	0	0	1	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	a0018	547	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE1_chr11_114513934_114564881	0/0	a0019	547	1	1	0	0	0	0	copy fasta	NXPE1	chr11	114513934	114564881
NXPE2_chr11_114673527_114712069	1/0	a0001	559	230	72	39	91	9	18	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	a0002	559	121	13	26	61	4	17	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/1	a0003	559	54	0	5	43	1	4	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	a0004	559	8	6	2	0	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	a0005	559	3	0	0	0	0	3	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	a0006	559	2	0	0	2	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	a0007	559	2	0	2	0	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	a0008	559	2	0	0	2	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	a0009	559	2	2	0	0	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	a0010	559	1	0	0	1	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	a0011	559	1	1	0	0	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	a0012	514	1	0	0	1	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE2_chr11_114673527_114712069	0/0	a0013	559	1	0	0	1	0	0	copy fasta	NXPE2	chr11	114673527	114712069
NXPE3_chr3_101774211_101833231	1/1	a0001	559	366	90	61	162	13	38	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	a0002	559	5	0	3	1	1	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	a0003	559	4	0	0	4	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	a0004	559	3	3	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	a0005	559	1	0	0	1	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE3_chr3_101774211_101833231	0/0	a0006	559	1	1	0	0	0	0	copy fasta	NXPE3	chr3	101774211	101833231
NXPE4_chr11_114565591_114600786	0/0	a0001	544	187	20	16	127	6	18	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	1/1	a0002	544	146	13	37	74	4	16	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	a0003	544	85	54	20	0	1	10	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	a0004	544	3	2	1	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	a0005	544	2	2	0	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	a0006	544	2	2	0	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	a0007	544	2	0	2	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	a0008	544	1	0	1	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	a0009	544	1	0	0	0	1	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	a0010	544	1	1	0	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	a0011	544	1	0	1	0	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPE4_chr11_114565591_114600786	0/0	a0012	544	1	0	0	1	0	0	copy fasta	NXPE4	chr11	114565591	114600786
NXPH1_chr7_8428609_8757961	0/0	a0001	271	208	82	40	62	4	20	copy fasta	NXPH1	chr7	8428609	8757961
NXPH2_chr2_138664157_138785390	1/1	a0001	264	349	84	65	150	12	36	copy fasta	NXPH2	chr2	138664157	138785390
NXPH2_chr2_138664157_138785390	0/0	a0002	264	1	0	1	0	0	0	copy fasta	NXPH2	chr2	138664157	138785390
NXPH3_chr17_49570871_49588827	1/1	a0001	252	419	98	80	178	17	44	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	a0002	252	1	0	0	1	0	0	copy fasta	NXPH3	chr17	49570871	49588827