JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
NXPH3_chr17_49570871_49588827	0/0	a0003	252	1	0	0	1	0	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH3_chr17_49570871_49588827	0/0	a0004	252	1	0	0	0	1	0	copy fasta	NXPH3	chr17	49570871	49588827
NXPH4_chr12_57211794_57231449	1/1	a0001	308	364	83	62	164	14	39	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	0/0	a0002	309	14	12	2	0	0	0	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	0/0	a0003	308	3	3	0	0	0	0	copy fasta	NXPH4	chr12	57211794	57231449
NXPH4_chr12_57211794_57231449	0/0	a0004	308	1	0	0	0	0	1	copy fasta	NXPH4	chr12	57211794	57231449
NXT1_chr20_23345791_23359771	1/1	a0001	140	434	96	76	204	14	42	copy fasta	NXT1	chr20	23345791	23359771
NXT2_chrX_109531844_109549698	1/1	a0001	142	294	70	51	128	9	34	copy fasta	NXT2	chrX	109531844	109549698
NYAP1_chr7_100478927_100499802	1/1	a0001	841	357	80	62	150	17	46	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	a0002	841	2	2	0	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	a0003	841	1	0	0	1	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	a0004	841	1	0	0	1	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	a0005	841	1	0	0	0	1	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	a0006	841	1	1	0	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	a0007	841	1	1	0	0	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	a0008	841	1	0	0	1	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP1_chr7_100478927_100499802	0/0	a0009	416	1	0	0	1	0	0	copy fasta	NYAP1	chr7	100478927	100499802
NYAP2_chr2_225394710_225708654	0/1	a0001	719	165	68	32	47	3	14	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	1/0	a0002	719	22	0	1	14	2	4	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	a0003	719	3	2	1	0	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	a0004	719	1	0	0	1	0	0	copy fasta	NYAP2	chr2	225394710	225708654
NYAP2_chr2_225394710_225708654	0/0	a0005	719	1	0	0	0	1	0	copy fasta	NYAP2	chr2	225394710	225708654
NYNRIN_chr14_24394003_24424283	1/1	a0001	1898	258	64	46	120	9	17	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	a0002	1898	65	7	23	11	6	18	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	a0003	1898	59	0	4	49	1	5	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	a0004	1898	37	11	1	21	0	4	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	a0005	1898	15	8	2	0	0	5	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	a0006	1904	4	4	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	a0007	1898	2	2	0	0	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	a0008	1898	2	0	0	2	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	a0009	1898	2	0	0	2	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	a0010	1898	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	a0011	1898	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	a0012	1898	1	0	0	0	0	1	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	a0013	1898	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	a0014	1319	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYNRIN_chr14_24394003_24424283	0/0	a0015	1898	1	0	0	1	0	0	copy fasta	NYNRIN	chr14	24394003	24424283
NYX_chrX_41442343_41480652	0/0	a0000	0	1	0	0	1	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	1/1	a0001	476	298	73	57	127	11	28	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	a0002	476	2	2	0	0	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	a0003	476	2	2	0	0	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	a0004	476	2	0	0	2	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	a0005	108	1	0	0	1	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	a0006	476	1	1	0	0	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	a0007	270	1	0	0	1	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	a0008	476	1	0	0	1	0	0	copy fasta	NYX	chrX	41442343	41480652
NYX_chrX_41442343_41480652	0/0	a0009	128	1	0	0	1	0	0	copy fasta	NYX	chrX	41442343	41480652
OAF_chr11_120206032_120235334	1/0	a0001	273	212	42	13	135	0	21	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/1	a0002	273	163	54	53	24	9	22	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	a0003	273	23	2	16	1	1	3	copy fasta	OAF	chr11	120206032	120235334