JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OAF_chr11_120206032_120235334	0/0	a0004	273	1	0	0	1	0	0	copy fasta	OAF	chr11	120206032	120235334
OAF_chr11_120206032_120235334	0/0	a0005	273	1	0	0	1	0	0	copy fasta	OAF	chr11	120206032	120235334
OARD1_chr6_41059772_41077356	1/1	a0001	152	369	93	64	160	10	40	copy fasta	OARD1	chr6	41059772	41077356
OARD1_chr6_41059772_41077356	0/0	a0002	152	1	1	0	0	0	0	copy fasta	OARD1	chr6	41059772	41077356
OAS1_chr12_112901962_112924903	0/1	a0001	400	241	20	50	138	8	24	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	0/0	a0002	400	111	61	14	30	3	3	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	1/0	a0003	400	72	4	8	40	3	16	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	0/0	a0004	400	7	3	0	3	0	1	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	0/0	a0005	400	2	1	1	0	0	0	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	0/0	a0006	400	1	0	0	1	0	0	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	0/0	a0007	400	1	1	0	0	0	0	copy fasta	OAS1	chr12	112901962	112924903
OAS1_chr12_112901962_112924903	0/0	a0008	400	1	0	1	0	0	0	copy fasta	OAS1	chr12	112901962	112924903
OAS2_chr12_112973519_113016723	1/1	a0001	687	375	89	67	160	14	43	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	a0002	382	1	0	0	1	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	a0003	687	1	1	0	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	a0004	687	1	0	0	0	0	1	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	a0005	687	1	0	1	0	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS2_chr12_112973519_113016723	0/0	a0006	687	1	0	0	1	0	0	copy fasta	OAS2	chr12	112973519	113016723
OAS3_chr12_112933474_112978251	0/1	a0001	1087	182	33	31	92	4	21	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	1/0	a0002	1087	68	11	9	30	2	15	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0003	1087	49	8	13	22	2	4	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0004	1087	24	20	3	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0005	1087	16	0	12	4	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0006	1087	8	4	0	4	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0007	1087	3	3	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0008	1087	3	3	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0009	1087	2	0	0	2	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0010	1087	2	1	1	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0011	1087	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0012	1087	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0013	1087	1	0	0	0	0	1	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0014	607	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0015	843	1	0	0	0	0	1	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0016	1087	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0017	1087	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0018	1087	1	0	0	1	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0019	1087	1	0	1	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0020	1087	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0021	1087	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0022	1087	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OAS3_chr12_112933474_112978251	0/0	a0023	1087	1	1	0	0	0	0	copy fasta	OAS3	chr12	112933474	112978251
OASL_chr12_121014111_121044246	1/1	a0001	514	382	95	69	159	18	39	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	a0002	514	2	0	0	2	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	a0003	514	1	0	0	0	0	1	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	a0004	514	1	1	0	0	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	a0005	514	1	0	0	1	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	a0006	514	1	0	1	0	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	a0007	514	1	0	0	1	0	0	copy fasta	OASL	chr12	121014111	121044246
OASL_chr12_121014111_121044246	0/0	a0008	514	1	0	0	1	0	0	copy fasta	OASL	chr12	121014111	121044246
OAT_chr10_124392303_124423923	1/1	a0001	439	381	94	67	152	16	50	copy fasta	OAT	chr10	124392303	124423923