JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OAT_chr10_124392303_124423923	0/0	a0002	439	1	0	1	0	0	0	copy fasta	OAT	chr10	124392303	124423923
OBI1_chr13_78609289_78664155	1/1	a0001	726	289	92	56	95	10	34	copy fasta	OBI1	chr13	78609289	78664155
OBI1_chr13_78609289_78664155	0/0	a0002	726	1	0	0	1	0	0	copy fasta	OBI1	chr13	78609289	78664155
OBI1_chr13_78609289_78664155	0/0	a0003	726	1	1	0	0	0	0	copy fasta	OBI1	chr13	78609289	78664155
OBI1_chr13_78609289_78664155	0/0	a0004	726	1	0	0	1	0	0	copy fasta	OBI1	chr13	78609289	78664155
OBI1_chr13_78609289_78664155	0/0	a0005	726	1	1	0	0	0	0	copy fasta	OBI1	chr13	78609289	78664155
OBI1_chr13_78609289_78664155	0/0	a0006	726	1	1	0	0	0	0	copy fasta	OBI1	chr13	78609289	78664155
OBI1_chr13_78609289_78664155	0/0	a0007	726	1	1	0	0	0	0	copy fasta	OBI1	chr13	78609289	78664155
OBI1_chr13_78609289_78664155	0/0	a0008	726	1	0	0	1	0	0	copy fasta	OBI1	chr13	78609289	78664155
OBP2A_chr9_135541126_135554969	0/0	a0001	170	245	23	51	135	8	28	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	a0002	170	73	32	10	31	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/1	a0003	170	67	5	15	31	5	10	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	a0004	170	37	21	6	3	3	4	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	a0005	170	6	6	0	0	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	a0006	170	6	0	1	5	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	a0007	170	4	4	0	0	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	a0008	170	3	0	0	0	0	3	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	a0009	170	3	0	0	0	2	1	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	a0010	170	3	2	1	0	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	a0011	170	2	0	0	0	0	2	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	a0012	170	2	2	0	0	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	a0013	170	1	0	0	1	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	a0014	170	1	1	0	0	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	a0015	170	1	0	0	0	0	1	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	a0016	170	1	0	0	0	0	1	copy fasta	OBP2A	chr9	135541126	135554969
OBP2B_chr9_133200279_133214250	1/0	a0001	170	408	90	62	199	9	47	copy fasta	OBP2B	chr9	133200279	133214250
OBP2B_chr9_133200279_133214250	0/0	a0002	170	19	0	10	9	0	0	copy fasta	OBP2B	chr9	133200279	133214250
OBP2B_chr9_133200279_133214250	0/0	a0003	170	14	1	9	0	3	1	copy fasta	OBP2B	chr9	133200279	133214250
OBP2B_chr9_133200279_133214250	0/0	a0004	170	3	3	0	0	0	0	copy fasta	OBP2B	chr9	133200279	133214250
OBP2B_chr9_133200279_133214250	0/0	a0005	170	2	2	0	0	0	0	copy fasta	OBP2B	chr9	133200279	133214250
OBP2B_chr9_133200279_133214250	0/0	a0006	170	1	0	1	0	0	0	copy fasta	OBP2B	chr9	133200279	133214250
OBSCN_chr1_228203044_228383876	0/0	a0001	8925	22	1	8	5	2	6	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0002	8925	18	0	9	7	1	1	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0003	8925	15	12	3	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0004	8925	11	0	0	11	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0005	8925	9	0	3	5	0	1	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0006	8925	8	0	3	5	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0007	8925	6	0	4	0	1	1	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0008	8925	6	1	0	5	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0009	8925	5	0	0	4	0	1	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0010	8925	5	1	0	4	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0011	8925	4	0	1	3	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0012	8925	4	4	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0013	8925	4	3	1	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0014	8925	4	0	3	1	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0015	8925	4	4	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0016	8925	4	0	0	4	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0017	8925	4	0	0	4	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0018	8925	3	3	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	a0019	8925	3	3	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876