JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OC90_chr8_132019216_132064382	0/0	a0007	477	1	0	0	0	0	1	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	a0008	477	1	0	0	1	0	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	a0009	477	1	1	0	0	0	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	a0010	477	1	1	0	0	0	0	copy fasta	OC90	chr8	132019216	132064382
OCA2_chr15_27749875_28104315	1/1	a0001	838	78	34	18	4	4	16	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	a0002	838	8	2	4	0	0	2	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	a0003	838	5	0	0	5	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	a0004	838	4	4	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	a0005	838	2	2	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	a0006	838	2	2	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	a0007	838	2	0	0	2	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	a0008	838	1	0	0	0	0	1	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	a0009	838	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	a0010	838	1	0	1	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	a0011	838	1	0	1	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	a0012	838	1	0	0	1	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	a0013	838	1	0	0	0	0	1	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	a0014	838	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	a0015	838	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	a0016	838	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCEL1_chr19_17221226_17234219	1/0	a0001	264	304	55	56	144	13	35	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	a0002	264	110	33	20	46	2	9	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/1	a0003	264	18	7	4	0	2	4	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	a0004	264	5	0	0	5	0	0	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	a0005	264	2	0	0	2	0	0	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	a0006	264	2	2	0	0	0	0	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	a0007	264	1	0	0	0	1	0	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	a0008	264	1	0	0	1	0	0	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	a0009	264	1	1	0	0	0	0	copy fasta	OCEL1	chr19	17221226	17234219
OCIAD1_chr4_48826088_48866815	1/1	a0001	245	340	71	60	151	16	40	copy fasta	OCIAD1	chr4	48826088	48866815
OCIAD1_chr4_48826088_48866815	0/0	a0002	245	1	1	0	0	0	0	copy fasta	OCIAD1	chr4	48826088	48866815
OCIAD1_chr4_48826088_48866815	0/0	a0003	245	1	0	0	1	0	0	copy fasta	OCIAD1	chr4	48826088	48866815
OCIAD2_chr4_48880019_48911774	1/1	a0001	154	360	79	66	162	14	37	copy fasta	OCIAD2	chr4	48880019	48911774
OCIAD2_chr4_48880019_48911774	0/0	a0002	154	3	3	0	0	0	0	copy fasta	OCIAD2	chr4	48880019	48911774
OCIAD2_chr4_48880019_48911774	0/0	a0003	154	1	0	0	0	0	1	copy fasta	OCIAD2	chr4	48880019	48911774
OCLN_chr5_69487790_69563104	1/1	a0001	522	281	69	63	115	4	28	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	a0002	522	3	3	0	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	a0003	522	2	2	0	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	a0004	522	1	0	1	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	a0005	522	1	1	0	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	a0006	522	1	1	0	0	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCLN_chr5_69487790_69563104	0/0	a0007	522	1	0	0	1	0	0	copy fasta	OCLN	chr5	69487790	69563104
OCM2_chr7_97979687_97995196	1/1	a0001	109	448	99	76	209	18	44	copy fasta	OCM2	chr7	97979687	97995196
OCM2_chr7_97979687_97995196	0/0	a0002	109	1	0	0	1	0	0	copy fasta	OCM2	chr7	97979687	97995196
OCM2_chr7_97979687_97995196	0/0	a0003	109	1	1	0	0	0	0	copy fasta	OCM2	chr7	97979687	97995196
OCM_chr7_5875798_5891363	1/1	a0001	109	444	91	81	210	14	46	copy fasta	OCM	chr7	5875798	5891363
OCM_chr7_5875798_5891363	0/0	a0002	109	6	5	1	0	0	0	copy fasta	OCM	chr7	5875798	5891363
OCRL_chrX_129535259_129597556	1/1	a0001	901	273	71	32	135	7	26	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	a0002	901	1	1	0	0	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	a0003	901	1	0	0	1	0	0	copy fasta	OCRL	chrX	129535259	129597556