JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OCRL_chrX_129535259_129597556	0/0	a0004	901	1	0	0	1	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	a0005	130	1	0	0	1	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCRL_chrX_129535259_129597556	0/0	a0006	39	1	0	0	1	0	0	copy fasta	OCRL	chrX	129535259	129597556
OCSTAMP_chr20_46535946_46555654	1/1	a0001	566	415	87	69	196	12	49	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	a0002	566	10	0	0	10	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	a0003	566	5	5	0	0	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	a0004	566	4	4	0	0	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	a0005	566	2	0	0	2	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	a0006	566	1	0	0	1	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	a0007	566	1	1	0	0	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	a0008	566	1	0	0	0	0	1	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	a0009	566	1	0	0	1	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	a0010	566	1	1	0	0	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
OCSTAMP_chr20_46535946_46555654	0/0	a0011	566	1	0	1	0	0	0	copy fasta	OCSTAMP	chr20	46535946	46555654
ODAD1_chr19_48291462_48326971	1/1	a0001	707	253	48	45	128	6	24	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0002	707	54	9	14	25	1	5	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0003	707	28	9	8	0	4	7	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0004	707	18	11	0	3	0	4	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0005	707	7	7	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0006	707	6	1	5	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0007	707	5	0	0	5	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0008	707	5	2	1	0	0	2	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0009	707	4	2	2	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0010	707	3	3	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0011	707	2	2	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0012	707	2	1	1	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0013	20	1	0	0	1	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0014	707	1	0	0	1	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0015	707	1	0	0	1	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0016	707	1	1	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0017	707	1	0	0	0	1	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0018	707	1	0	0	1	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0019	707	1	0	0	0	0	1	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0020	707	1	1	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0021	707	1	0	0	0	0	1	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0022	707	1	1	0	0	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD1_chr19_48291462_48326971	0/0	a0023	707	1	0	0	1	0	0	copy fasta	ODAD1	chr19	48291462	48326971
ODAD2_chr10_27807168_28004079	1/0	a0001	1044	168	48	41	51	8	19	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	a0002	1044	36	3	4	24	2	3	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	a0003	1044	22	1	6	15	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	a0004	1044	18	9	5	1	1	2	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	a0005	1044	13	8	3	1	1	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	a0006	1044	12	0	2	7	2	1	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	a0007	1044	12	0	1	10	0	1	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	a0008	1044	6	4	1	1	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	a0009	1044	2	2	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	a0010	1044	2	2	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	a0011	1044	2	2	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	a0012	241	1	1	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	a0013	1044	1	1	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079