JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ODAD2_chr10_27807168_28004079	0/0	a0014	1044	1	0	0	1	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	a0015	1044	1	1	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	a0016	1044	1	1	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	a0017	1044	1	0	0	1	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/1	a0018	1044	1	0	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	a0019	1044	1	0	0	1	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	a0020	1044	1	0	0	1	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	a0021	1044	1	0	1	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD2_chr10_27807168_28004079	0/0	a0022	1044	1	1	0	0	0	0	copy fasta	ODAD2	chr10	27807168	28004079
ODAD3_chr19_11415605_11440121	1/1	a0001	595	379	82	70	174	16	35	copy fasta	ODAD3	chr19	11415605	11440121
ODAD3_chr19_11415605_11440121	0/0	a0002	595	8	8	0	0	0	0	copy fasta	ODAD3	chr19	11415605	11440121
ODAD3_chr19_11415605_11440121	0/0	a0003	595	3	0	1	0	2	0	copy fasta	ODAD3	chr19	11415605	11440121
ODAD3_chr19_11415605_11440121	0/0	a0004	595	3	0	0	1	0	2	copy fasta	ODAD3	chr19	11415605	11440121
ODAD3_chr19_11415605_11440121	0/0	a0005	595	2	2	0	0	0	0	copy fasta	ODAD3	chr19	11415605	11440121
ODAD3_chr19_11415605_11440121	0/0	a0006	595	2	0	1	0	0	1	copy fasta	ODAD3	chr19	11415605	11440121
ODAD3_chr19_11415605_11440121	0/0	a0007	595	1	0	0	1	0	0	copy fasta	ODAD3	chr19	11415605	11440121
ODAD4_chr17_41925617_41971503	1/1	a0001	672	319	76	66	120	16	39	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/0	a0002	672	6	0	2	4	0	0	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/0	a0003	672	3	3	0	0	0	0	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/0	a0004	672	3	0	2	0	1	0	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/0	a0005	671	3	0	3	0	0	0	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/0	a0006	672	2	2	0	0	0	0	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/0	a0007	672	2	0	1	0	1	0	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/0	a0008	672	1	0	0	0	0	1	copy fasta	ODAD4	chr17	41925617	41971503
ODAD4_chr17_41925617_41971503	0/0	a0009	672	1	1	0	0	0	0	copy fasta	ODAD4	chr17	41925617	41971503
ODAM_chr4_70190725_70209576	1/0	a0001	279	323	83	59	141	7	32	copy fasta	ODAM	chr4	70190725	70209576
ODAM_chr4_70190725_70209576	0/1	a0002	279	120	14	12	72	5	16	copy fasta	ODAM	chr4	70190725	70209576
ODAM_chr4_70190725_70209576	0/0	a0003	279	1	0	0	1	0	0	copy fasta	ODAM	chr4	70190725	70209576
ODAM_chr4_70190725_70209576	0/0	a0004	279	1	0	1	0	0	0	copy fasta	ODAM	chr4	70190725	70209576
ODAM_chr4_70190725_70209576	0/0	a0005	279	1	1	0	0	0	0	copy fasta	ODAM	chr4	70190725	70209576
ODAPH_chr4_75551066_75569817	1/1	a0001	130	241	42	60	102	11	24	copy fasta	ODAPH	chr4	75551066	75569817
ODAPH_chr4_75551066_75569817	0/0	a0002	130	122	30	11	63	5	13	copy fasta	ODAPH	chr4	75551066	75569817
ODAPH_chr4_75551066_75569817	0/0	a0003	130	85	19	7	48	2	9	copy fasta	ODAPH	chr4	75551066	75569817
ODAPH_chr4_75551066_75569817	0/0	a0004	130	4	4	0	0	0	0	copy fasta	ODAPH	chr4	75551066	75569817
ODAPH_chr4_75551066_75569817	0/0	a0005	61	1	0	0	1	0	0	copy fasta	ODAPH	chr4	75551066	75569817
ODAPH_chr4_75551066_75569817	0/0	a0006	130	1	1	0	0	0	0	copy fasta	ODAPH	chr4	75551066	75569817
ODC1_chr2_10434968_10453327	1/1	a0001	461	432	97	81	195	12	45	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	a0002	461	1	0	0	1	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	a0003	461	1	1	0	0	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	a0004	461	1	0	0	0	0	1	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	a0005	461	1	1	0	0	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	a0006	461	1	1	0	0	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODC1_chr2_10434968_10453327	0/0	a0007	461	1	0	1	0	0	0	copy fasta	ODC1	chr2	10434968	10453327
ODF1_chr8_102546589_102566018	0/0	a0001	250	163	37	31	62	10	23	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/1	a0002	241	148	25	31	71	3	17	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	1/0	a0003	250	93	4	5	75	2	6	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	a0004	244	37	27	6	3	1	0	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	a0005	241	5	0	0	5	0	0	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	a0006	244	3	3	0	0	0	0	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	a0007	241	3	3	0	0	0	0	copy fasta	ODF1	chr8	102546589	102566018