JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ODF1_chr8_102546589_102566018	0/0	a0008	250	3	0	0	0	0	3	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	a0009	241	1	0	1	0	0	0	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	a0010	250	1	1	0	0	0	0	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	a0011	241	1	0	1	0	0	0	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	a0012	241	1	0	1	0	0	0	copy fasta	ODF1	chr8	102546589	102566018
ODF1_chr8_102546589_102566018	0/0	a0013	241	1	0	0	0	0	1	copy fasta	ODF1	chr8	102546589	102566018
ODF2L_chr1_86341837_86401323	1/1	a0001	644	352	85	69	149	12	35	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	a0002	644	40	0	1	36	0	3	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	a0003	644	6	0	0	6	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	a0004	644	3	0	0	3	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	a0005	644	2	2	0	0	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	a0006	644	1	0	1	0	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	a0007	644	1	1	0	0	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2L_chr1_86341837_86401323	0/0	a0008	644	1	0	1	0	0	0	copy fasta	ODF2L	chr1	86341837	86401323
ODF2_chr9_128451006_128506292	1/1	a0001	912	331	82	50	153	12	32	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	a0002	912	4	2	2	0	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	a0003	912	3	0	0	3	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	a0004	912	2	0	0	0	0	2	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	a0005	912	1	0	0	1	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	a0006	912	1	1	0	0	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	a0007	912	1	0	0	1	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	a0008	912	1	0	0	0	0	1	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	a0009	912	1	0	0	0	0	1	copy fasta	ODF2	chr9	128451006	128506292
ODF2_chr9_128451006_128506292	0/0	a0010	912	1	1	0	0	0	0	copy fasta	ODF2	chr9	128451006	128506292
ODF3B_chr22_50525426_50537498	1/0	a0001	253	393	94	74	167	15	42	copy fasta	ODF3B	chr22	50525426	50537498
ODF3B_chr22_50525426_50537498	0/0	a0002	253	7	1	0	2	1	3	copy fasta	ODF3B	chr22	50525426	50537498
ODF3B_chr22_50525426_50537498	0/1	a0003	253	5	3	0	0	0	1	copy fasta	ODF3B	chr22	50525426	50537498
ODF3B_chr22_50525426_50537498	0/0	a0004	253	1	0	0	1	0	0	copy fasta	ODF3B	chr22	50525426	50537498
ODF3L1_chr15_75719041_75732688	1/1	a0001	274	291	60	60	122	12	35	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L1_chr15_75719041_75732688	0/0	a0002	274	48	7	18	16	4	3	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L1_chr15_75719041_75732688	0/0	a0003	274	35	11	0	24	0	0	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L1_chr15_75719041_75732688	0/0	a0004	14	7	7	0	0	0	0	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L1_chr15_75719041_75732688	0/0	a0005	274	3	3	0	0	0	0	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L1_chr15_75719041_75732688	0/0	a0006	274	1	1	0	0	0	0	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L1_chr15_75719041_75732688	0/0	a0007	274	1	1	0	0	0	0	copy fasta	ODF3L1	chr15	75719041	75732688
ODF3L2_chr19_458361_479983	0/0	a0001	289	136	16	26	83	2	9	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	1/1	a0002	289	135	42	26	44	3	18	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	a0003	199	14	1	3	9	1	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	a0004	199	13	0	1	7	0	5	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	a0005	289	6	6	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	a0006	289	5	5	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	a0007	289	4	0	0	4	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	a0008	289	2	2	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	a0009	289	2	2	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	a0010	289	1	1	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	a0011	289	1	0	0	1	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	a0012	289	1	1	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	a0013	289	1	1	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	a0014	289	1	0	0	0	0	1	copy fasta	ODF3L2	chr19	458361	479983
ODF3L2_chr19_458361_479983	0/0	a0015	289	1	0	0	0	0	1	copy fasta	ODF3L2	chr19	458361	479983