JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ODF3L2_chr19_458361_479983	0/0	a0016	289	1	1	0	0	0	0	copy fasta	ODF3L2	chr19	458361	479983
ODF3_chr11_191761_205258	1/1	a0001	254	365	86	66	156	13	42	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	a0002	254	11	0	7	3	1	0	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	a0003	254	3	0	1	2	0	0	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	a0004	254	2	2	0	0	0	0	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	a0005	254	2	0	0	0	2	0	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	a0006	254	1	0	0	0	0	1	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	a0007	254	1	1	0	0	0	0	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	a0008	254	1	0	0	1	0	0	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	a0009	254	1	0	0	0	0	1	copy fasta	ODF3	chr11	191761	205258
ODF3_chr11_191761_205258	0/0	a0010	254	1	1	0	0	0	0	copy fasta	ODF3	chr11	191761	205258
ODF4_chr17_8334840_8351046	1/1	a0001	257	209	29	29	116	7	26	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	a0002	257	137	45	13	65	6	8	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	a0003	257	53	3	23	17	2	8	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	a0004	257	26	17	5	2	1	1	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	a0005	257	2	0	0	2	0	0	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	a0006	257	1	1	0	0	0	0	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	a0007	257	1	0	0	0	0	1	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	a0008	257	1	0	0	1	0	0	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	a0009	257	1	0	0	1	0	0	copy fasta	ODF4	chr17	8334840	8351046
ODF4_chr17_8334840_8351046	0/0	a0010	145	1	1	0	0	0	0	copy fasta	ODF4	chr17	8334840	8351046
ODR4_chr1_186370838_186426375	1/0	a0001	454	313	68	38	169	9	28	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/1	a0002	454	82	13	28	27	3	10	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	a0003	454	4	0	0	4	0	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	a0004	454	4	0	2	0	2	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	a0005	454	3	3	0	0	0	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	a0006	454	2	2	0	0	0	0	copy fasta	ODR4	chr1	186370838	186426375
ODR4_chr1_186370838_186426375	0/0	a0007	454	2	2	0	0	0	0	copy fasta	ODR4	chr1	186370838	186426375
OFD1_chrX_13729748_13774357	1/1	a0001	1012	313	63	56	157	10	25	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	a0002	1012	6	4	2	0	0	0	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	a0003	1012	2	0	0	2	0	0	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	a0004	564	1	0	0	1	0	0	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	a0005	583	1	0	0	1	0	0	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	a0006	1012	1	0	0	0	1	0	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	a0007	1012	1	1	0	0	0	0	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	a0008	1012	1	0	0	0	0	1	copy fasta	OFD1	chrX	13729748	13774357
OFD1_chrX_13729748_13774357	0/0	a0009	419	1	0	0	1	0	0	copy fasta	OFD1	chrX	13729748	13774357
OGA_chr10_101779450_101823444	1/1	a0001	916	331	84	63	137	13	32	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	a0002	916	8	0	0	8	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	a0003	916	1	0	1	0	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	a0004	916	1	0	0	1	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	a0005	916	1	1	0	0	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	a0006	916	1	0	0	1	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	a0007	916	1	0	0	1	0	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	a0008	916	1	0	0	0	1	0	copy fasta	OGA	chr10	101779450	101823444
OGA_chr10_101779450_101823444	0/0	a0009	916	1	1	0	0	0	0	copy fasta	OGA	chr10	101779450	101823444
OGDHL_chr10_49729641_49767323	1/1	a0001	1010	238	65	49	87	9	26	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	a0002	1010	64	18	22	12	4	8	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	a0003	1010	2	2	0	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	a0004	1010	2	2	0	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323