JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OGDHL_chr10_49729641_49767323	0/0	a0005	1010	1	1	0	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	a0006	1010	1	1	0	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	a0007	1010	1	0	0	0	0	1	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	a0008	1010	1	0	0	0	1	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	a0009	1010	1	1	0	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	a0010	1000	1	0	1	0	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	a0011	1010	1	0	0	0	0	1	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	a0012	1010	1	0	0	1	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	a0013	1010	1	0	0	1	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDHL_chr10_49729641_49767323	0/0	a0014	1010	1	0	0	1	0	0	copy fasta	OGDHL	chr10	49729641	49767323
OGDH_chr7_44601627_44714066	1/0	a0001	1023	273	89	37	115	14	17	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/1	a0002	1023	29	1	2	18	2	5	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	a0003	1023	1	0	1	0	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	a0004	1023	1	0	0	1	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	a0005	1023	1	0	0	1	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGDH_chr7_44601627_44714066	0/0	a0006	1023	1	0	0	1	0	0	copy fasta	OGDH	chr7	44601627	44714066
OGFOD1_chr16_56446554_56484104	1/1	a0001	542	389	88	63	188	14	34	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	a0002	542	30	1	2	19	0	8	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	a0003	542	2	0	0	2	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	a0004	542	1	0	1	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	a0005	542	1	0	0	0	0	1	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	a0006	542	1	0	0	0	0	1	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	a0007	542	1	1	0	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	a0008	542	1	1	0	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	a0009	542	1	0	0	0	0	1	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	a0010	542	1	1	0	0	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	a0011	542	1	0	0	0	0	1	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD1_chr16_56446554_56484104	0/0	a0012	542	1	0	0	1	0	0	copy fasta	OGFOD1	chr16	56446554	56484104
OGFOD2_chr12_122970244_122985042	1/1	a0001	350	359	84	66	155	10	42	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	a0002	350	1	0	1	0	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	a0003	350	1	0	0	1	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	a0004	289	1	1	0	0	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	a0005	350	1	0	1	0	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	a0006	350	1	1	0	0	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	a0007	350	1	1	0	0	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD2_chr12_122970244_122985042	0/0	a0008	350	1	1	0	0	0	0	copy fasta	OGFOD2	chr12	122970244	122985042
OGFOD3_chr17_82384210_82423586	1/1	a0001	319	321	86	59	126	13	35	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	a0002	319	15	3	5	2	1	4	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	a0003	319	5	0	5	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	a0004	319	1	0	1	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	a0005	319	1	0	1	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	a0006	319	1	0	1	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	a0007	319	1	0	0	1	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	a0008	319	1	1	0	0	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	a0009	319	1	0	0	0	0	1	copy fasta	OGFOD3	chr17	82384210	82423586
OGFOD3_chr17_82384210_82423586	0/0	a0010	319	1	0	0	1	0	0	copy fasta	OGFOD3	chr17	82384210	82423586
OGFRL1_chr6_71283811_71314059	1/1	a0001	451	304	60	53	139	14	36	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	a0002	451	111	35	21	45	2	8	copy fasta	OGFRL1	chr6	71283811	71314059
OGFRL1_chr6_71283811_71314059	0/0	a0003	451	1	1	0	0	0	0	copy fasta	OGFRL1	chr6	71283811	71314059
OGFR_chr20_62799835_62819000	0/0	a0000	0	1	0	0	0	0	1	copy fasta	OGFR	chr20	62799835	62819000