JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OGFR_chr20_62799835_62819000	1/0	a0001	677	138	24	28	62	6	17	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/1	a0002	677	73	20	15	32	4	1	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0003	677	65	0	10	46	1	8	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0004	637	51	19	10	13	2	7	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0005	657	14	2	4	1	4	3	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0006	677	7	7	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0007	637	5	0	3	0	0	2	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0008	677	5	4	1	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0009	657	5	5	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0010	677	5	5	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0011	677	5	0	0	5	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0012	677	5	0	0	5	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0013	657	4	0	0	3	0	1	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0014	677	3	3	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0015	697	3	0	0	3	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0016	677	2	2	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0017	677	2	2	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0018	657	2	0	2	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0019	697	2	0	0	2	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0020	677	2	0	0	0	0	2	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0021	677	2	0	0	1	0	1	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0022	677	1	0	0	0	0	1	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0023	677	1	0	1	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0024	657	1	1	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0025	677	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0026	657	1	0	0	0	0	1	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0027	717	1	1	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0028	717	1	1	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0029	657	1	1	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0030	617	1	1	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0031	657	1	0	0	0	1	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0032	657	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0033	677	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0034	677	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0035	657	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0036	677	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0037	677	1	0	0	0	0	1	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0038	677	1	1	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0039	677	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0040	637	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0041	677	1	1	0	0	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGFR_chr20_62799835_62819000	0/0	a0042	659	1	0	0	1	0	0	copy fasta	OGFR	chr20	62799835	62819000
OGG1_chr3_9744952_9762407	1/0	a0001	345	270	71	55	106	12	25	copy fasta	OGG1	chr3	9744952	9762407
OGG1_chr3_9744952_9762407	0/1	a0002	345	156	12	25	95	4	19	copy fasta	OGG1	chr3	9744952	9762407
OGG1_chr3_9744952_9762407	0/0	a0003	345	12	12	0	0	0	0	copy fasta	OGG1	chr3	9744952	9762407
OGG1_chr3_9744952_9762407	0/0	a0004	345	2	0	0	0	2	0	copy fasta	OGG1	chr3	9744952	9762407
OGG1_chr3_9744952_9762407	0/0	a0005	345	1	0	0	1	0	0	copy fasta	OGG1	chr3	9744952	9762407
OGG1_chr3_9744952_9762407	0/0	a0006	345	1	1	0	0	0	0	copy fasta	OGG1	chr3	9744952	9762407
OGN_chr9_92378268_92409578	1/1	a0001	298	366	78	66	168	14	38	copy fasta	OGN	chr9	92378268	92409578
OGT_chrX_71528104_71580892	1/1	a0001	1046	256	62	41	110	9	32	copy fasta	OGT	chrX	71528104	71580892