JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OGT_chrX_71528104_71580892	0/0	a0002	329	1	0	0	1	0	0	copy fasta	OGT	chrX	71528104	71580892
OIP5_chr15_41304273_41337591	1/1	a0001	229	326	73	52	147	12	40	copy fasta	OIP5	chr15	41304273	41337591
OIP5_chr15_41304273_41337591	0/0	a0002	229	20	0	3	17	0	0	copy fasta	OIP5	chr15	41304273	41337591
OIP5_chr15_41304273_41337591	0/0	a0003	229	6	4	2	0	0	0	copy fasta	OIP5	chr15	41304273	41337591
OIP5_chr15_41304273_41337591	0/0	a0004	229	2	2	0	0	0	0	copy fasta	OIP5	chr15	41304273	41337591
OIP5_chr15_41304273_41337591	0/0	a0005	229	1	1	0	0	0	0	copy fasta	OIP5	chr15	41304273	41337591
OIP5_chr15_41304273_41337591	0/0	a0006	193	1	0	1	0	0	0	copy fasta	OIP5	chr15	41304273	41337591
OIT3_chr10_72888739_72938036	1/1	a0001	545	263	91	36	106	6	22	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	a0002	545	6	0	0	6	0	0	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	a0003	545	2	2	0	0	0	0	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	a0004	545	2	0	0	0	0	2	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	a0005	545	1	0	0	1	0	0	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	a0006	545	1	0	0	1	0	0	copy fasta	OIT3	chr10	72888739	72938036
OIT3_chr10_72888739_72938036	0/0	a0007	545	1	1	0	0	0	0	copy fasta	OIT3	chr10	72888739	72938036
OLA1_chr2_174067447_174253532	1/0	a0001	396	234	60	48	85	8	32	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/1	a0002	396	25	13	6	1	0	4	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	a0003	396	1	0	0	0	0	1	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	a0004	396	1	0	0	0	0	1	copy fasta	OLA1	chr2	174067447	174253532
OLA1_chr2_174067447_174253532	0/0	a0005	396	1	1	0	0	0	0	copy fasta	OLA1	chr2	174067447	174253532
OLAH_chr10_15038943_15078853	1/1	a0001	265	404	94	80	173	15	40	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	a0002	265	1	0	0	1	0	0	copy fasta	OLAH	chr10	15038943	15078853
OLAH_chr10_15038943_15078853	0/0	a0003	265	1	0	0	0	1	0	copy fasta	OLAH	chr10	15038943	15078853
OLFM1_chr9_135082668_135126180	1/1	a0001	485	357	90	82	119	14	50	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	a0002	396	1	0	0	1	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	a0003	469	1	0	0	1	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM1_chr9_135082668_135126180	0/0	a0004	485	1	0	0	1	0	0	copy fasta	OLFM1	chr9	135082668	135126180
OLFM2_chr19_9848718_9941515	1/1	a0001	454	251	83	33	98	8	27	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	a0002	454	73	4	15	44	0	10	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	a0003	454	17	2	10	0	2	3	copy fasta	OLFM2	chr19	9848718	9941515
OLFM2_chr19_9848718_9941515	0/0	a0004	454	1	1	0	0	0	0	copy fasta	OLFM2	chr19	9848718	9941515
OLFM3_chr1_101797560_102001926	1/1	a0001	458	304	81	52	125	4	40	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	a0002	458	1	0	0	1	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM3_chr1_101797560_102001926	0/0	a0003	458	1	1	0	0	0	0	copy fasta	OLFM3	chr1	101797560	102001926
OLFM4_chr13_53023813_53057057	1/1	a0001	510	409	59	75	215	10	48	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	a0002	510	36	27	9	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	a0003	510	6	2	0	0	2	2	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	a0004	510	4	4	0	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	a0005	510	3	2	1	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	a0006	510	2	0	0	2	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	a0007	510	1	1	0	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	a0008	213	1	0	1	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	a0009	505	1	0	0	1	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	a0010	510	1	0	0	1	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	a0011	510	1	0	0	1	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFM4_chr13_53023813_53057057	0/0	a0012	510	1	1	0	0	0	0	copy fasta	OLFM4	chr13	53023813	53057057
OLFML1_chr11_7480506_7516377	1/0	a0001	402	277	66	52	110	9	39	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/1	a0002	402	79	7	16	40	5	10	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	a0003	402	18	16	2	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	a0004	402	4	1	3	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	a0005	402	2	0	2	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377