JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OLFML1_chr11_7480506_7516377	0/0	a0006	402	2	0	2	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	a0007	402	1	1	0	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	a0008	402	1	0	0	1	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	a0009	402	1	1	0	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	a0010	402	1	0	0	1	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	a0011	402	1	0	1	0	0	0	copy fasta	OLFML1	chr11	7480506	7516377
OLFML1_chr11_7480506_7516377	0/0	a0012	402	1	0	0	0	0	1	copy fasta	OLFML1	chr11	7480506	7516377
OLFML2A_chr9_124772133_124819882	0/0	a0001	652	288	70	41	136	8	33	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	1/1	a0002	652	39	10	11	6	8	2	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	a0003	652	13	0	3	10	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	a0004	652	10	9	1	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	a0005	652	7	0	0	7	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	a0006	652	6	4	2	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	a0007	652	5	0	0	5	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	a0008	652	3	3	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	a0009	652	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	a0010	652	1	0	0	0	0	1	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	a0011	652	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	a0012	652	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	a0013	652	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	a0014	652	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	a0015	652	1	1	0	0	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	a0016	652	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2A_chr9_124772133_124819882	0/0	a0017	652	1	0	0	1	0	0	copy fasta	OLFML2A	chr9	124772133	124819882
OLFML2B_chr1_161978192_162028869	0/1	a0001	750	221	46	41	107	8	18	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	1/0	a0002	750	96	21	15	34	1	24	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0003	750	17	5	0	12	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0004	750	15	6	0	8	0	1	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0005	750	7	0	1	5	0	1	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0006	750	4	0	0	4	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0007	750	4	0	1	0	3	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0008	750	4	4	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0009	750	2	1	1	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0010	750	2	2	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0011	750	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0012	750	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0013	750	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0014	750	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0015	750	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0016	750	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0017	750	1	0	0	1	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0018	750	1	0	1	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0019	750	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0020	750	1	0	0	1	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0021	750	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML2B_chr1_161978192_162028869	0/0	a0022	750	1	1	0	0	0	0	copy fasta	OLFML2B	chr1	161978192	162028869
OLFML3_chr1_113974474_113987253	1/1	a0001	406	457	93	81	215	16	50	copy fasta	OLFML3	chr1	113974474	113987253
OLFML3_chr1_113974474_113987253	0/0	a0002	406	2	1	0	1	0	0	copy fasta	OLFML3	chr1	113974474	113987253
OLFML3_chr1_113974474_113987253	0/0	a0003	406	1	0	1	0	0	0	copy fasta	OLFML3	chr1	113974474	113987253
OLIG1_chr21_33065141_33077413	0/0	a0000	0	1	0	0	1	0	0	copy fasta	OLIG1	chr21	33065141	33077413