JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OLIG1_chr21_33065141_33077413	1/1	a0001	271	439	86	81	209	13	48	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	a0002	268	10	8	2	0	0	0	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	a0003	272	3	0	1	1	1	0	copy fasta	OLIG1	chr21	33065141	33077413
OLIG1_chr21_33065141_33077413	0/0	a0004	271	1	0	0	1	0	0	copy fasta	OLIG1	chr21	33065141	33077413
OLIG2_chr21_33020935_33034185	1/1	a0001	323	445	95	86	197	18	47	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	a0002	323	2	1	0	0	0	1	copy fasta	OLIG2	chr21	33020935	33034185
OLIG2_chr21_33020935_33034185	0/0	a0003	323	1	0	0	1	0	0	copy fasta	OLIG2	chr21	33020935	33034185
OLIG3_chr6_137487199_137499394	1/1	a0001	272	425	98	82	185	13	45	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	a0002	272	15	0	0	14	0	1	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	a0003	272	7	0	0	7	0	0	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	a0004	272	3	0	0	0	3	0	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	a0005	272	1	0	0	1	0	0	copy fasta	OLIG3	chr6	137487199	137499394
OLIG3_chr6_137487199_137499394	0/0	a0006	272	1	0	0	1	0	0	copy fasta	OLIG3	chr6	137487199	137499394
OLR1_chr12_10153301_10177132	1/0	a0001	273	318	70	62	142	11	32	copy fasta	OLR1	chr12	10153301	10177132
OLR1_chr12_10153301_10177132	0/1	a0002	273	84	18	6	46	5	8	copy fasta	OLR1	chr12	10153301	10177132
OMA1_chr1_58475719_58551726	1/1	a0001	524	294	57	61	126	15	33	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	a0002	524	31	0	2	27	0	2	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	a0003	524	29	18	5	0	1	5	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	a0004	524	15	11	4	0	0	0	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	a0005	524	7	2	4	0	0	1	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	a0006	524	4	0	0	4	0	0	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	a0007	524	1	0	0	0	0	1	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	a0008	524	1	1	0	0	0	0	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	a0009	524	1	0	0	1	0	0	copy fasta	OMA1	chr1	58475719	58551726
OMA1_chr1_58475719_58551726	0/0	a0010	524	1	1	0	0	0	0	copy fasta	OMA1	chr1	58475719	58551726
OMD_chr9_92407380_92429471	1/1	a0001	421	396	89	71	187	15	32	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	a0002	421	22	3	4	11	1	3	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	a0003	421	5	5	0	0	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	a0004	421	2	0	0	2	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	a0005	421	1	1	0	0	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	a0006	416	1	0	1	0	0	0	copy fasta	OMD	chr9	92407380	92429471
OMD_chr9_92407380_92429471	0/0	a0007	421	1	0	0	0	0	1	copy fasta	OMD	chr9	92407380	92429471
OMG_chr17_31289647_31302239	1/1	a0001	440	354	87	57	167	10	31	copy fasta	OMG	chr17	31289647	31302239
OMG_chr17_31289647_31302239	0/0	a0002	440	6	0	3	0	2	1	copy fasta	OMG	chr17	31289647	31302239
OMG_chr17_31289647_31302239	0/0	a0003	440	3	3	0	0	0	0	copy fasta	OMG	chr17	31289647	31302239
OMG_chr17_31289647_31302239	0/0	a0004	440	1	0	0	1	0	0	copy fasta	OMG	chr17	31289647	31302239
OMP_chr11_77097840_77108331	1/0	a0001	163	422	89	74	197	15	46	copy fasta	OMP	chr11	77097840	77108331
OMP_chr11_77097840_77108331	0/1	a0002	163	10	0	8	0	1	0	copy fasta	OMP	chr11	77097840	77108331
OMP_chr11_77097840_77108331	0/0	a0003	163	4	4	0	0	0	0	copy fasta	OMP	chr11	77097840	77108331
OMP_chr11_77097840_77108331	0/0	a0004	163	1	1	0	0	0	0	copy fasta	OMP	chr11	77097840	77108331
OMP_chr11_77097840_77108331	0/0	a0005	163	1	0	0	1	0	0	copy fasta	OMP	chr11	77097840	77108331
OMP_chr11_77097840_77108331	0/0	a0006	163	1	1	0	0	0	0	copy fasta	OMP	chr11	77097840	77108331
OMP_chr11_77097840_77108331	0/0	a0007	163	1	1	0	0	0	0	copy fasta	OMP	chr11	77097840	77108331
ONECUT1_chr15_52750053_52795336	1/1	a0001	465	408	95	73	176	18	44	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	a0002	465	1	0	1	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	a0003	465	1	1	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	a0004	465	1	1	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT1_chr15_52750053_52795336	0/0	a0005	465	1	1	0	0	0	0	copy fasta	ONECUT1	chr15	52750053	52795336
ONECUT2_chr18_57430374_57496298	1/1	a0001	504	389	88	61	181	12	45	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	a0002	505	7	5	1	0	0	1	copy fasta	ONECUT2	chr18	57430374	57496298