JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ONECUT2_chr18_57430374_57496298	0/0	a0003	504	1	1	0	0	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	a0004	508	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	a0005	504	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT2_chr18_57430374_57496298	0/0	a0006	504	1	0	0	1	0	0	copy fasta	ONECUT2	chr18	57430374	57496298
ONECUT3_chr19_1748506_1785988	1/1	a0001	494	336	82	77	124	14	37	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	a0002	474	10	3	3	3	0	1	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	a0003	474	8	2	1	2	0	3	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	a0004	494	2	0	0	0	2	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	a0005	334	2	0	0	1	0	1	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	a0006	494	2	2	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	a0007	494	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	a0008	494	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	a0009	318	1	0	0	0	0	1	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	a0010	494	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	a0011	494	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	a0012	494	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	a0013	494	1	0	0	1	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	a0014	494	1	0	0	0	0	1	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	a0015	494	1	0	1	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
ONECUT3_chr19_1748506_1785988	0/0	a0016	494	1	1	0	0	0	0	copy fasta	ONECUT3	chr19	1748506	1785988
OOEP_chr6_73363555_73374897	0/0	a0001	149	214	26	39	106	15	28	copy fasta	OOEP	chr6	73363555	73374897
OOEP_chr6_73363555_73374897	1/1	a0002	149	150	51	25	55	1	16	copy fasta	OOEP	chr6	73363555	73374897
OOEP_chr6_73363555_73374897	0/0	a0003	149	63	11	16	36	0	0	copy fasta	OOEP	chr6	73363555	73374897
OOEP_chr6_73363555_73374897	0/0	a0004	149	1	0	0	1	0	0	copy fasta	OOEP	chr6	73363555	73374897
OOSP1_chr11_59933432_59962480	1/1	a0001	184	382	92	70	160	14	44	copy fasta	OOSP1	chr11	59933432	59962480
OOSP1_chr11_59933432_59962480	0/0	a0002	107	2	2	0	0	0	0	copy fasta	OOSP1	chr11	59933432	59962480
OOSP1_chr11_59933432_59962480	0/0	a0003	184	1	1	0	0	0	0	copy fasta	OOSP1	chr11	59933432	59962480
OOSP1_chr11_59933432_59962480	0/0	a0004	184	1	1	0	0	0	0	copy fasta	OOSP1	chr11	59933432	59962480
OOSP2_chr11_60035409_60053044	1/1	a0001	158	192	71	17	65	11	26	copy fasta	OOSP2	chr11	60035409	60053044
OOSP2_chr11_60035409_60053044	0/0	a0002	158	5	1	1	0	3	0	copy fasta	OOSP2	chr11	60035409	60053044
OOSP2_chr11_60035409_60053044	0/0	a0003	158	1	0	0	1	0	0	copy fasta	OOSP2	chr11	60035409	60053044
OOSP3_chr11_59873782_59901483	1/1	a0001	193	285	88	66	94	9	26	copy fasta	OOSP3	chr11	59873782	59901483
OOSP3_chr11_59873782_59901483	0/0	a0002	193	30	0	7	13	1	9	copy fasta	OOSP3	chr11	59873782	59901483
OOSP3_chr11_59873782_59901483	0/0	a0003	193	26	4	3	15	2	2	copy fasta	OOSP3	chr11	59873782	59901483
OOSP3_chr11_59873782_59901483	0/0	a0004	193	1	0	0	0	0	1	copy fasta	OOSP3	chr11	59873782	59901483
OOSP4A_chr11_59959033_59975343	1/1	a0001	184	404	88	76	188	12	38	copy fasta	OOSP4A	chr11	59959033	59975343
OOSP4A_chr11_59959033_59975343	0/0	a0002	184	3	1	2	0	0	0	copy fasta	OOSP4A	chr11	59959033	59975343
OOSP4A_chr11_59959033_59975343	0/0	a0003	184	3	3	0	0	0	0	copy fasta	OOSP4A	chr11	59959033	59975343
OOSP4A_chr11_59959033_59975343	0/0	a0004	184	1	1	0	0	0	0	copy fasta	OOSP4A	chr11	59959033	59975343
OOSP4A_chr11_59959033_59975343	0/0	a0005	184	1	1	0	0	0	0	copy fasta	OOSP4A	chr11	59959033	59975343
OOSP4B_chr11_60012181_60036095	1/1	a0001	160	394	90	65	186	15	36	copy fasta	OOSP4B	chr11	60012181	60036095
OOSP4B_chr11_60012181_60036095	0/0	a0002	160	1	0	1	0	0	0	copy fasta	OOSP4B	chr11	60012181	60036095
OOSP4B_chr11_60012181_60036095	0/0	a0003	160	1	0	0	0	1	0	copy fasta	OOSP4B	chr11	60012181	60036095
OPA1_chr3_193588208_193702811	1/0	a0001	1015	212	37	35	104	11	24	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/1	a0002	1015	153	48	27	57	5	15	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	a0003	1015	12	2	1	9	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	a0004	1015	8	0	2	6	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	a0005	1015	2	0	1	0	0	1	copy fasta	OPA1	chr3	193588208	193702811
OPA1_chr3_193588208_193702811	0/0	a0006	1015	1	1	0	0	0	0	copy fasta	OPA1	chr3	193588208	193702811
OPA3_chr19_45541281_45589802	1/1	a0001	179	396	92	78	166	16	42	copy fasta	OPA3	chr19	45541281	45589802