JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OPA3_chr19_45541281_45589802	0/0	a0002	179	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPA3_chr19_45541281_45589802	0/0	a0003	179	1	1	0	0	0	0	copy fasta	OPA3	chr19	45541281	45589802
OPALIN_chr10_96338221_96364002	1/1	a0001	141	397	98	70	172	12	43	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	a0002	141	2	0	0	0	0	2	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	a0003	141	2	0	2	0	0	0	copy fasta	OPALIN	chr10	96338221	96364002
OPALIN_chr10_96338221_96364002	0/0	a0004	141	1	0	0	0	0	1	copy fasta	OPALIN	chr10	96338221	96364002
OPCML_chr11_132409981_133537501	0/0	a0001	338	68	46	16	0	2	4	copy fasta	OPCML	chr11	132409981	133537501
OPHN1_chrX_68037344_68438495	1/0	a0001	802	151	53	26	48	7	16	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/1	a0002	802	2	0	1	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	a0003	802	1	1	0	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	a0004	782	1	0	1	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPLAH_chr8_144046266_144065692	1/0	a0001	1288	227	30	45	103	12	36	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0002	1288	28	28	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0003	1288	18	17	1	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0004	1288	8	8	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0005	1288	7	1	4	0	1	1	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0006	1288	4	4	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/1	a0007	1288	4	0	2	0	0	1	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0008	1288	3	0	2	0	1	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0009	1288	2	0	0	1	1	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0010	1288	2	2	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0011	1288	1	0	1	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0012	1288	1	0	0	0	0	1	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0013	1288	1	1	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0014	1288	1	0	0	0	1	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0015	1288	1	1	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0016	1288	1	0	1	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0017	1288	1	0	0	1	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0018	1288	1	1	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0019	1288	1	0	0	1	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0020	1288	1	0	1	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0021	1288	1	0	0	0	0	1	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0022	1288	1	0	0	1	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0023	1288	1	1	0	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0024	1288	1	0	0	1	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	a0025	1288	1	0	1	0	0	0	copy fasta	OPLAH	chr8	144046266	144065692
OPN1LW_chrX_154139243_154164032	0/1	a0001	364	93	20	8	52	2	10	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0002	364	30	0	13	12	2	3	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0003	364	30	2	6	17	2	3	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	1/0	a0004	364	27	0	8	14	3	1	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0005	364	19	2	3	9	0	5	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0006	364	7	1	2	2	0	2	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0007	364	5	5	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0008	364	4	0	4	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0009	364	4	1	2	0	0	1	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0010	364	4	2	0	1	1	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0011	364	3	1	0	1	0	1	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0012	364	3	1	1	0	0	1	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0013	364	2	0	0	2	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	a0014	364	2	0	2	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032