JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OPN1MW_chrX_154177596_154201861	0/0	a0002	364	8	0	1	7	0	0	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	a0003	364	6	4	2	0	0	0	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	a0004	364	4	0	2	1	0	1	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	a0005	364	3	0	0	2	0	1	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	a0006	19	1	0	1	0	0	0	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	a0007	364	1	0	0	1	0	0	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	a0008	364	1	0	1	0	0	0	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	a0009	341	1	0	1	0	0	0	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1SW_chr7_128767485_128780794	1/1	a0001	345	383	92	82	153	16	38	copy fasta	OPN1SW	chr7	128767485	128780794
OPN1SW_chr7_128767485_128780794	0/0	a0002	345	2	0	2	0	0	0	copy fasta	OPN1SW	chr7	128767485	128780794
OPN1SW_chr7_128767485_128780794	0/0	a0003	345	2	0	0	2	0	0	copy fasta	OPN1SW	chr7	128767485	128780794
OPN1SW_chr7_128767485_128780794	0/0	a0004	345	1	0	0	1	0	0	copy fasta	OPN1SW	chr7	128767485	128780794
OPN3_chr1_241588124_241645369	1/1	a0001	402	384	97	63	162	16	44	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	a0002	402	16	0	1	14	0	1	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	a0003	402	4	0	0	4	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	a0004	402	2	0	2	0	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	a0005	402	1	0	0	0	0	1	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	a0006	402	1	0	0	1	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	a0007	402	1	0	0	1	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	a0008	402	1	1	0	0	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN4_chr10_86649547_86671460	0/1	a0001	478	287	68	38	143	7	30	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	1/0	a0002	478	96	21	18	44	7	5	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	a0003	478	34	2	12	13	2	5	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	a0004	478	20	0	14	0	2	4	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	a0005	478	4	4	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	a0006	478	1	1	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	a0007	478	1	1	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	a0008	478	1	0	0	1	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	a0009	478	1	1	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	a0010	478	1	0	0	0	0	1	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	a0011	478	1	0	0	1	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	a0012	478	1	0	0	1	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	a0013	478	1	0	0	0	0	1	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	a0014	478	1	0	0	1	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN5_chr6_47777032_47831381	1/1	a0001	354	322	88	72	108	14	38	copy fasta	OPN5	chr6	47777032	47831381
OPRD1_chr1_28807170_28876267	0/1	a0001	372	271	75	57	100	12	26	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	1/0	a0002	372	13	2	8	0	0	2	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	a0003	372	13	11	2	0	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	a0004	372	6	0	5	1	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRD1_chr1_28807170_28876267	0/0	a0005	372	1	0	0	1	0	0	copy fasta	OPRD1	chr1	28807170	28876267
OPRK1_chr8_53220724_53256637	1/1	a0001	380	357	79	74	144	16	42	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	a0002	380	12	12	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	a0003	380	1	0	1	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	a0004	262	1	0	1	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRK1_chr8_53220724_53256637	0/0	a0005	380	1	1	0	0	0	0	copy fasta	OPRK1	chr8	53220724	53256637
OPRL1_chr20_64075082_64105633	1/1	a0001	370	64	17	17	6	0	22	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	a0002	370	1	1	0	0	0	0	copy fasta	OPRL1	chr20	64075082	64105633
OPRL1_chr20_64075082_64105633	0/0	a0003	370	1	0	1	0	0	0	copy fasta	OPRL1	chr20	64075082	64105633
OPRM1_chr6_154034240_154137356	1/0	a0001	400	184	63	42	55	10	13	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/1	a0002	400	52	0	12	26	4	9	copy fasta	OPRM1	chr6	154034240	154137356