JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OPRM1_chr6_154034240_154137356	0/0	a0003	400	27	27	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	a0004	400	2	0	0	1	0	1	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	a0005	400	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	a0006	400	1	1	0	0	0	0	copy fasta	OPRM1	chr6	154034240	154137356
OPRM1_chr6_154034240_154137356	0/0	a0007	400	1	0	0	0	0	1	copy fasta	OPRM1	chr6	154034240	154137356
OPRPN_chr4_70392940_70415195	1/1	a0001	248	422	93	75	188	16	48	copy fasta	OPRPN	chr4	70392940	70415195
OPRPN_chr4_70392940_70415195	0/0	a0002	248	29	0	4	25	0	0	copy fasta	OPRPN	chr4	70392940	70415195
OPRPN_chr4_70392940_70415195	0/0	a0003	248	2	0	0	2	0	0	copy fasta	OPRPN	chr4	70392940	70415195
OPRPN_chr4_70392940_70415195	0/0	a0004	85	1	0	0	1	0	0	copy fasta	OPRPN	chr4	70392940	70415195
OPRPN_chr4_70392940_70415195	0/0	a0005	248	1	0	1	0	0	0	copy fasta	OPRPN	chr4	70392940	70415195
OPRPN_chr4_70392940_70415195	0/0	a0006	248	1	1	0	0	0	0	copy fasta	OPRPN	chr4	70392940	70415195
OPTC_chr1_203489153_203513949	1/0	a0001	332	349	78	67	152	9	42	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/1	a0002	332	50	12	3	29	1	4	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/0	a0003	332	2	0	2	0	0	0	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/0	a0004	332	2	0	0	2	0	0	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/0	a0005	42	1	0	0	1	0	0	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/0	a0006	332	1	1	0	0	0	0	copy fasta	OPTC	chr1	203489153	203513949
OPTC_chr1_203489153_203513949	0/0	a0007	332	1	1	0	0	0	0	copy fasta	OPTC	chr1	203489153	203513949
OPTN_chr10_13095163_13143308	1/1	a0001	577	370	79	69	163	16	41	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	a0002	577	38	13	3	20	2	0	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	a0003	577	9	0	0	9	0	0	copy fasta	OPTN	chr10	13095163	13143308
OPTN_chr10_13095163_13143308	0/0	a0004	577	1	0	0	0	0	1	copy fasta	OPTN	chr10	13095163	13143308
OR10A2_chr11_6858057_6879717	0/0	a0001	303	137	8	23	83	8	15	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/1	a0002	303	137	18	34	69	4	11	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	a0003	303	134	19	22	73	4	16	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	1/0	a0004	303	57	51	5	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	a0005	303	2	2	0	0	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A2_chr11_6858057_6879717	0/0	a0006	303	1	0	0	1	0	0	copy fasta	OR10A2	chr11	6858057	6879717
OR10A3_chr11_7932171_7946708	0/1	a0001	314	426	78	81	203	18	45	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	a0002	314	7	7	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	a0003	314	6	6	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	a0004	314	2	1	1	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	a0005	314	1	0	0	1	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	a0006	314	1	1	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	a0007	314	1	0	0	1	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	a0008	314	1	0	0	0	0	1	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	a0009	314	1	1	0	0	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A3_chr11_7932171_7946708	0/0	a0010	314	1	0	0	1	0	0	copy fasta	OR10A3	chr11	7932171	7946708
OR10A4_chr11_6871625_6882619	1/1	a0001	315	265	34	51	142	13	23	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	a0002	315	124	19	21	65	4	15	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	a0003	315	27	23	4	0	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	a0004	315	9	9	0	0	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	a0005	315	6	0	5	0	1	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	a0006	315	3	3	0	0	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	a0007	315	3	3	0	0	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	a0008	315	2	0	0	1	0	1	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	a0009	315	1	1	0	0	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	a0010	315	1	0	0	0	0	1	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	a0011	315	1	1	0	0	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	a0012	315	1	0	0	1	0	0	copy fasta	OR10A4	chr11	6871625	6882619