JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR10A4_chr11_6871625_6882619	0/0	a0013	315	1	0	0	1	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	a0014	315	1	0	1	0	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A4_chr11_6871625_6882619	0/0	a0015	315	1	1	0	0	0	0	copy fasta	OR10A4	chr11	6871625	6882619
OR10A5_chr11_6840683_6851636	1/1	a0001	317	407	52	70	219	18	46	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	a0002	317	11	10	1	0	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	a0003	317	8	6	2	0	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	a0004	317	5	5	0	0	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	a0005	317	5	5	0	0	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	a0006	317	4	4	0	0	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	a0007	317	4	4	0	0	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	a0008	317	3	0	3	0	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	a0009	24	1	1	0	0	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	a0010	317	1	0	0	1	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A5_chr11_6840683_6851636	0/0	a0011	317	1	1	0	0	0	0	copy fasta	OR10A5	chr11	6840683	6851636
OR10A6_chr11_7919592_7936268	0/0	a0001	314	170	18	27	99	6	20	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/1	a0002	314	167	40	36	64	9	17	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	a0003	314	79	23	9	35	3	9	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	a0004	314	6	6	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	a0005	314	6	0	6	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	a0006	305	4	1	1	2	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	a0007	314	2	2	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	a0008	314	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	a0009	314	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	a0010	314	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	a0011	310	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	a0012	314	1	0	1	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	a0013	314	1	0	0	1	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A6_chr11_7919592_7936268	0/0	a0014	314	1	1	0	0	0	0	copy fasta	OR10A6	chr11	7919592	7936268
OR10A7_chr12_55216025_55226975	1/1	a0001	316	402	96	71	185	12	36	copy fasta	OR10A7	chr12	55216025	55226975
OR10A7_chr12_55216025_55226975	0/0	a0002	316	7	0	0	5	0	2	copy fasta	OR10A7	chr12	55216025	55226975
OR10A7_chr12_55216025_55226975	0/0	a0003	316	2	0	2	0	0	0	copy fasta	OR10A7	chr12	55216025	55226975
OR10A7_chr12_55216025_55226975	0/0	a0004	316	1	0	0	1	0	0	copy fasta	OR10A7	chr12	55216025	55226975
OR10A7_chr12_55216025_55226975	0/0	a0005	316	1	0	0	1	0	0	copy fasta	OR10A7	chr12	55216025	55226975
OR10A7_chr12_55216025_55226975	0/0	a0006	316	1	0	1	0	0	0	copy fasta	OR10A7	chr12	55216025	55226975
OR10AD1_chr12_48197339_48208292	1/1	a0001	317	221	36	40	109	9	25	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	a0002	121	77	22	13	26	6	10	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	a0003	317	76	11	15	42	1	7	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	a0004	317	12	11	1	0	0	0	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	a0005	317	10	9	1	0	0	0	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	a0006	317	6	4	0	2	0	0	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	a0007	317	5	0	4	0	0	1	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	a0008	317	4	0	0	4	0	0	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	a0009	317	1	0	0	1	0	0	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	a0010	317	1	0	0	0	0	1	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AD1_chr12_48197339_48208292	0/0	a0011	317	1	1	0	0	0	0	copy fasta	OR10AD1	chr12	48197339	48208292
OR10AG1_chr11_55960755_55974945	1/1	a0001	321	430	82	72	222	14	38	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	a0002	321	8	4	2	0	2	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	a0003	321	6	6	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	a0004	321	2	0	0	0	0	2	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	a0005	321	2	2	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945