JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR10AG1_chr11_55960755_55974945	0/0	a0006	321	1	1	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	a0007	321	1	0	1	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	a0008	321	1	0	1	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10AG1_chr11_55960755_55974945	0/0	a0009	321	1	1	0	0	0	0	copy fasta	OR10AG1	chr11	55960755	55974945
OR10C1_chr6_29434306_29445977	0/0	a0001	312	151	43	28	60	7	13	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	a0002	312	147	19	22	83	4	19	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/1	a0003	312	76	5	13	50	1	6	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	a0004	312	35	9	4	22	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	a0005	54	10	10	0	0	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	a0006	312	8	1	5	0	2	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	a0007	312	6	1	2	0	0	3	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	a0008	312	5	5	0	0	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	a0009	312	4	0	0	4	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	a0010	312	2	0	0	1	0	1	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	a0011	312	2	1	1	0	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	a0012	312	2	0	0	0	0	2	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	a0013	312	1	1	0	0	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	a0014	312	1	1	0	0	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10C1_chr6_29434306_29445977	0/0	a0015	312	1	0	1	0	0	0	copy fasta	OR10C1	chr6	29434306	29445977
OR10D3_chr11_124178345_124193780	1/0	a0001	312	186	48	43	69	3	22	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/1	a0002	251	137	22	20	76	8	10	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	a0003	251	94	12	12	55	3	12	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	a0004	251	6	6	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	a0005	312	4	3	1	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	a0006	312	3	0	0	3	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	a0007	312	3	3	0	0	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	a0008	312	2	0	0	0	0	2	copy fasta	OR10D3	chr11	124178345	124193780
OR10D3_chr11_124178345_124193780	0/0	a0009	251	1	0	0	1	0	0	copy fasta	OR10D3	chr11	124178345	124193780
OR10G2_chr14_21628836_21639940	0/1	a0001	310	216	32	38	111	10	24	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	1/0	a0002	310	117	16	18	66	6	10	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	a0003	310	74	15	9	41	1	8	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	a0004	310	28	2	19	6	1	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	a0005	310	12	12	0	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	a0006	310	6	5	1	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	a0007	310	6	6	0	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	a0008	310	5	5	0	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	a0009	310	5	5	0	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	a0010	310	1	0	0	0	0	1	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	a0011	310	1	0	0	0	0	1	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	a0012	310	1	0	1	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	a0013	310	1	1	0	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G2_chr14_21628836_21639940	0/0	a0014	310	1	1	0	0	0	0	copy fasta	OR10G2	chr14	21628836	21639940
OR10G3_chr14_21563520_21585076	0/1	a0001	313	293	61	53	147	7	24	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	1/0	a0002	313	108	28	20	42	3	14	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	a0003	313	13	0	0	10	0	3	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	a0004	313	9	0	0	9	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	a0005	313	4	0	1	0	1	2	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	a0006	313	4	4	0	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	a0007	313	4	0	0	0	3	1	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	a0008	313	2	0	0	0	2	0	copy fasta	OR10G3	chr14	21563520	21585076