JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR10G3_chr14_21563520_21585076	0/0	a0009	313	1	0	1	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	a0010	313	1	1	0	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	a0011	313	1	0	0	1	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	a0012	313	1	0	1	0	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G3_chr14_21563520_21585076	0/0	a0013	313	1	0	0	1	0	0	copy fasta	OR10G3	chr14	21563520	21585076
OR10G4_chr11_124007997_124023732	0/0	a0001	311	134	24	29	55	7	19	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	1/1	a0002	311	133	43	18	53	5	12	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0003	311	91	4	20	54	5	8	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0004	311	48	5	10	33	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0005	311	6	5	1	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0006	311	4	0	0	4	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0007	311	3	3	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0008	310	3	3	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0009	311	2	2	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0010	311	2	2	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0011	311	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0012	311	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0013	311	1	0	0	1	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0014	311	1	0	0	1	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0015	311	1	0	0	0	1	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0016	310	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0017	311	1	0	0	0	0	1	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0018	311	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0019	311	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0020	311	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0021	311	1	1	0	0	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G4_chr11_124007997_124023732	0/0	a0022	311	1	0	0	1	0	0	copy fasta	OR10G4	chr11	124007997	124023732
OR10G6_chr11_123989163_124000161	1/1	a0001	332	442	84	79	218	16	43	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	a0002	332	7	7	0	0	0	0	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	a0003	332	4	0	0	4	0	0	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	a0004	332	3	3	0	0	0	0	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	a0005	1	2	2	0	0	0	0	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	a0006	332	2	0	0	2	0	0	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	a0007	332	1	1	0	0	0	0	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	a0008	332	1	0	0	0	0	1	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	a0009	332	1	0	1	0	0	0	copy fasta	OR10G6	chr11	123989163	124000161
OR10G6_chr11_123989163_124000161	0/0	a0010	332	1	1	0	0	0	0	copy fasta	OR10G6	chr11	123989163	124000161
OR10G7_chr11_124031013_124046325	0/0	a0001	311	117	7	22	69	5	14	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	1/1	a0002	311	110	36	14	38	6	14	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0003	311	105	5	25	53	7	15	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0004	311	48	5	12	31	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0005	311	42	17	2	19	0	4	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0006	311	21	4	1	16	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0007	311	10	9	1	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0008	311	4	4	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0009	311	3	3	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0010	191	3	2	1	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0011	311	2	1	1	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0012	311	2	0	2	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0013	311	2	1	0	1	0	0	copy fasta	OR10G7	chr11	124031013	124046325