JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR10G7_chr11_124031013_124046325	0/0	a0014	311	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0015	311	1	0	0	1	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0016	311	1	0	0	0	0	1	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0017	191	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0018	311	1	0	1	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0019	311	1	0	1	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0020	311	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0021	311	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0022	311	1	0	0	1	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0023	311	1	0	1	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0024	311	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0025	311	1	0	0	1	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G7_chr11_124031013_124046325	0/0	a0026	311	1	1	0	0	0	0	copy fasta	OR10G7	chr11	124031013	124046325
OR10G8_chr11_124021798_124035634	1/1	a0001	311	389	86	68	174	18	41	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	a0002	311	42	5	11	26	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	a0003	311	6	5	1	0	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	a0004	311	3	2	1	0	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	a0005	311	1	0	1	0	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	a0006	311	1	0	0	1	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	a0007	311	1	1	0	0	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	a0008	311	1	0	0	0	0	1	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	a0009	311	1	1	0	0	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G8_chr11_124021798_124035634	0/0	a0010	311	1	0	0	1	0	0	copy fasta	OR10G8	chr11	124021798	124035634
OR10G9_chr11_124018013_124028948	1/1	a0001	311	166	56	20	63	7	18	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0002	311	97	4	22	60	3	8	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0003	311	83	3	23	43	6	8	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0004	311	50	8	11	31	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0005	311	13	13	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0006	311	5	0	0	5	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0007	311	4	3	1	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0008	311	3	2	1	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0009	311	3	0	0	0	0	3	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0010	311	3	3	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0011	311	2	2	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0012	311	2	0	0	0	0	2	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0013	311	1	0	0	1	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0014	311	1	1	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0015	311	1	1	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0016	311	1	1	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0017	311	1	1	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0018	311	1	0	1	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0019	311	1	0	0	1	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0020	311	1	0	0	0	0	1	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0021	311	1	0	1	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0022	311	1	1	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10G9_chr11_124018013_124028948	0/0	a0023	311	1	1	0	0	0	0	copy fasta	OR10G9	chr11	124018013	124028948
OR10H1_chr19_15799549_15820664	1/0	a0001	318	314	69	62	138	7	37	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/1	a0002	318	58	7	10	26	7	7	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	a0003	318	5	5	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	a0004	318	5	5	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664