JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR10H1_chr19_15799549_15820664	0/0	a0005	318	4	3	1	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	a0006	318	4	0	2	0	0	2	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	a0007	318	1	0	0	1	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	a0008	318	1	0	0	1	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	a0009	318	1	0	1	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	a0010	318	1	0	0	1	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	a0011	318	1	0	0	1	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	a0012	318	1	1	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	a0013	318	1	1	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H1_chr19_15799549_15820664	0/0	a0014	318	1	1	0	0	0	0	copy fasta	OR10H1	chr19	15799549	15820664
OR10H2_chr19_15723024_15734052	1/1	a0001	315	195	30	42	83	12	26	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	a0002	315	122	3	21	93	2	3	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	a0003	315	71	39	15	1	4	12	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	a0004	315	18	18	0	0	0	0	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	a0005	307	2	0	2	0	0	0	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	a0006	23	1	0	0	1	0	0	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	a0007	315	1	0	0	1	0	0	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	a0008	315	1	1	0	0	0	0	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	a0009	315	1	1	0	0	0	0	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	a0010	315	1	0	0	1	0	0	copy fasta	OR10H2	chr19	15723024	15734052
OR10H2_chr19_15723024_15734052	0/0	a0011	315	1	0	0	0	0	1	copy fasta	OR10H2	chr19	15723024	15734052
OR10H3_chr19_15732985_15747343	0/0	a0001	316	135	0	21	110	2	2	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	0/0	a0002	316	86	8	21	44	3	10	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	0/0	a0003	316	66	36	13	1	4	12	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	1/0	a0004	316	55	16	13	14	3	8	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	0/1	a0005	316	54	5	8	26	6	8	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	0/0	a0006	316	18	18	0	0	0	0	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	0/0	a0007	316	2	2	0	0	0	0	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	0/0	a0008	295	1	0	0	1	0	0	copy fasta	OR10H3	chr19	15732985	15747343
OR10H3_chr19_15732985_15747343	0/0	a0009	316	1	1	0	0	0	0	copy fasta	OR10H3	chr19	15732985	15747343
OR10H4_chr19_15944008_15954958	1/0	a0001	316	308	37	64	155	14	37	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/1	a0002	316	71	39	8	12	4	7	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	a0003	316	10	10	0	0	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	a0004	316	3	0	0	3	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	a0005	316	3	3	0	0	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	a0006	316	2	0	0	2	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	a0007	316	2	0	0	2	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	a0008	316	1	0	0	1	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	a0009	316	1	1	0	0	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	a0010	316	1	0	0	1	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	a0011	316	1	0	1	0	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H4_chr19_15944008_15954958	0/0	a0012	316	1	0	1	0	0	0	copy fasta	OR10H4	chr19	15944008	15954958
OR10H5_chr19_15782661_15805357	1/1	a0001	315	175	45	35	61	10	22	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	a0002	315	115	3	19	89	0	4	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	a0003	315	50	27	12	0	2	9	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	a0004	315	26	3	5	14	0	4	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	a0005	315	7	7	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	a0006	315	6	0	4	0	0	2	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	a0007	315	4	4	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	a0008	315	2	0	0	0	2	0	copy fasta	OR10H5	chr19	15782661	15805357