JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR10H5_chr19_15782661_15805357	0/0	a0009	315	2	1	1	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	a0010	315	2	1	1	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	a0011	315	2	2	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	a0012	315	1	0	0	1	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	a0013	315	1	1	0	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	a0014	315	1	0	0	1	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	a0015	315	1	0	0	0	0	1	copy fasta	OR10H5	chr19	15782661	15805357
OR10H5_chr19_15782661_15805357	0/0	a0016	315	1	0	1	0	0	0	copy fasta	OR10H5	chr19	15782661	15805357
OR10J1_chr1_159434722_159445967	0/1	a0001	309	202	50	48	66	10	27	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	a0002	309	144	39	12	82	0	11	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	a0003	309	65	1	5	53	2	4	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	a0004	252	23	2	9	3	4	5	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	a0005	309	13	0	0	13	0	0	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	a0006	309	2	2	0	0	0	0	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	a0007	309	2	0	2	0	0	0	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	1/0	a0008	309	2	1	0	0	0	0	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	a0009	309	1	0	0	0	0	1	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	a0010	309	1	0	0	1	0	0	copy fasta	OR10J1	chr1	159434722	159445967
OR10J1_chr1_159434722_159445967	0/0	a0011	309	1	1	0	0	0	0	copy fasta	OR10J1	chr1	159434722	159445967
OR10J5_chr1_159530078_159541007	1/0	a0001	309	394	71	62	213	9	38	copy fasta	OR10J5	chr1	159530078	159541007
OR10J5_chr1_159530078_159541007	0/1	a0002	309	27	2	11	1	4	8	copy fasta	OR10J5	chr1	159530078	159541007
OR10J5_chr1_159530078_159541007	0/0	a0003	309	8	8	0	0	0	0	copy fasta	OR10J5	chr1	159530078	159541007
OR10J5_chr1_159530078_159541007	0/0	a0004	309	1	1	0	0	0	0	copy fasta	OR10J5	chr1	159530078	159541007
OR10J5_chr1_159530078_159541007	0/0	a0005	309	1	1	0	0	0	0	copy fasta	OR10J5	chr1	159530078	159541007
OR10J5_chr1_159530078_159541007	0/0	a0006	309	1	0	0	0	1	0	copy fasta	OR10J5	chr1	159530078	159541007
OR10J5_chr1_159530078_159541007	0/0	a0007	309	1	1	0	0	0	0	copy fasta	OR10J5	chr1	159530078	159541007
OR10J5_chr1_159530078_159541007	0/0	a0008	309	1	0	1	0	0	0	copy fasta	OR10J5	chr1	159530078	159541007
OR10K1_chr1_158456834_158472458	1/1	a0001	313	422	73	72	212	15	48	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	a0002	313	9	8	1	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	a0003	313	9	3	5	0	1	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	a0004	313	4	4	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	a0005	313	2	2	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	a0006	313	1	1	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	a0007	313	1	1	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	a0008	313	1	1	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K1_chr1_158456834_158472458	0/0	a0009	313	1	1	0	0	0	0	copy fasta	OR10K1	chr1	158456834	158472458
OR10K2_chr1_158413210_158431237	1/1	a0001	312	393	88	73	169	16	45	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	a0002	312	1	0	0	1	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	a0003	312	1	1	0	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	a0004	312	1	1	0	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	a0005	312	1	0	1	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	a0006	312	1	0	0	0	0	1	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	a0007	312	1	1	0	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10K2_chr1_158413210_158431237	0/0	a0008	312	1	1	0	0	0	0	copy fasta	OR10K2	chr1	158413210	158431237
OR10P1_chr12_55631892_55642833	1/1	a0001	313	323	77	47	158	7	32	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	a0002	313	103	7	27	49	9	11	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	a0003	313	5	5	0	0	0	0	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	a0004	313	2	2	0	0	0	0	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	a0005	313	2	2	0	0	0	0	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	a0006	313	1	0	0	0	0	1	copy fasta	OR10P1	chr12	55631892	55642833