JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR10P1_chr12_55631892_55642833	0/0	a0007	313	1	0	0	1	0	0	copy fasta	OR10P1	chr12	55631892	55642833
OR10P1_chr12_55631892_55642833	0/0	a0008	313	1	1	0	0	0	0	copy fasta	OR10P1	chr12	55631892	55642833
OR10Q1_chr11_58222882_58233918	0/1	a0001	319	336	45	67	171	11	41	copy fasta	OR10Q1	chr11	58222882	58233918
OR10Q1_chr11_58222882_58233918	0/0	a0002	319	72	20	11	34	3	4	copy fasta	OR10Q1	chr11	58222882	58233918
OR10Q1_chr11_58222882_58233918	1/0	a0003	319	27	19	1	5	1	0	copy fasta	OR10Q1	chr11	58222882	58233918
OR10Q1_chr11_58222882_58233918	0/0	a0004	319	11	9	2	0	0	0	copy fasta	OR10Q1	chr11	58222882	58233918
OR10Q1_chr11_58222882_58233918	0/0	a0005	319	4	4	0	0	0	0	copy fasta	OR10Q1	chr11	58222882	58233918
OR10Q1_chr11_58222882_58233918	0/0	a0006	317	3	0	1	0	1	1	copy fasta	OR10Q1	chr11	58222882	58233918
OR10Q1_chr11_58222882_58233918	0/0	a0007	319	2	2	0	0	0	0	copy fasta	OR10Q1	chr11	58222882	58233918
OR10Q1_chr11_58222882_58233918	0/0	a0008	319	1	1	0	0	0	0	copy fasta	OR10Q1	chr11	58222882	58233918
OR10R2_chr1_158467220_158485936	1/1	a0001	324	212	43	36	97	7	27	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	a0002	324	104	11	19	60	4	10	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	a0003	324	83	12	10	47	4	10	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	a0004	324	12	10	2	0	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	a0005	324	9	4	4	0	1	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	a0006	147	6	0	4	2	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	a0007	324	6	6	0	0	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	a0008	324	4	4	0	0	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	a0009	324	4	3	0	0	0	1	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	a0010	324	1	0	0	1	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	a0011	324	1	1	0	0	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	a0012	324	1	0	0	1	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	a0013	324	1	1	0	0	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	a0014	324	1	0	1	0	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10R2_chr1_158467220_158485936	0/0	a0015	324	1	1	0	0	0	0	copy fasta	OR10R2	chr1	158467220	158485936
OR10S1_chr11_123971661_123982781	1/1	a0001	322	363	71	55	181	11	43	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	a0002	322	50	4	14	26	2	4	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	a0003	322	19	9	6	0	1	3	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	a0004	322	7	6	1	0	0	0	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	a0005	322	4	4	0	0	0	0	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	a0006	322	2	0	0	2	0	0	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	a0007	322	1	0	0	1	0	0	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	a0008	322	1	1	0	0	0	0	copy fasta	OR10S1	chr11	123971661	123982781
OR10S1_chr11_123971661_123982781	0/0	a0009	322	1	1	0	0	0	0	copy fasta	OR10S1	chr11	123971661	123982781
OR10T2_chr1_158393522_158404466	1/1	a0001	314	260	45	44	138	7	24	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	a0002	314	88	26	20	24	6	12	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	a0003	314	56	1	9	37	1	8	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	a0004	314	9	9	0	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	a0005	314	7	7	0	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	a0006	314	5	0	3	0	2	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	a0007	314	3	3	0	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	a0008	314	2	2	0	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	a0009	314	2	2	0	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	a0010	314	2	0	0	0	0	2	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	a0011	314	2	2	0	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	a0012	314	1	0	1	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	a0013	314	1	0	0	1	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	a0014	314	1	0	0	1	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	a0015	314	1	0	0	1	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10T2_chr1_158393522_158404466	0/0	a0016	314	1	1	0	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466