JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR10T2_chr1_158393522_158404466	0/0	a0017	314	1	0	1	0	0	0	copy fasta	OR10T2	chr1	158393522	158404466
OR10V1_chr11_59707916_59718845	0/1	a0001	309	323	50	60	165	11	36	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	a0002	309	35	34	1	0	0	0	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	a0003	309	32	2	13	15	0	2	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	1/0	a0004	309	10	1	4	0	3	1	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	a0005	309	9	0	0	9	0	0	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	a0006	309	9	3	2	3	0	1	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	a0007	309	3	3	0	0	0	0	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	a0008	309	3	0	0	3	0	0	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	a0009	309	1	0	0	1	0	0	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	a0010	309	1	0	0	1	0	0	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	a0011	309	1	0	0	1	0	0	copy fasta	OR10V1	chr11	59707916	59718845
OR10V1_chr11_59707916_59718845	0/0	a0012	309	1	1	0	0	0	0	copy fasta	OR10V1	chr11	59707916	59718845
OR10W1_chr11_58261792_58273260	1/1	a0001	305	167	38	35	68	7	17	copy fasta	OR10W1	chr11	58261792	58273260
OR10W1_chr11_58261792_58273260	0/0	a0002	305	163	40	26	75	6	16	copy fasta	OR10W1	chr11	58261792	58273260
OR10W1_chr11_58261792_58273260	0/0	a0003	305	22	16	0	5	1	0	copy fasta	OR10W1	chr11	58261792	58273260
OR10W1_chr11_58261792_58273260	0/0	a0004	305	5	0	0	0	0	5	copy fasta	OR10W1	chr11	58261792	58273260
OR10W1_chr11_58261792_58273260	0/0	a0005	305	2	0	2	0	0	0	copy fasta	OR10W1	chr11	58261792	58273260
OR10W1_chr11_58261792_58273260	0/0	a0006	305	1	0	0	1	0	0	copy fasta	OR10W1	chr11	58261792	58273260
OR10W1_chr11_58261792_58273260	0/0	a0007	305	1	0	1	0	0	0	copy fasta	OR10W1	chr11	58261792	58273260
OR10W1_chr11_58261792_58273260	0/0	a0008	305	1	0	0	1	0	0	copy fasta	OR10W1	chr11	58261792	58273260
OR10X1_chr1_158573919_158584899	0/0	a0001	65	212	52	34	97	8	21	copy fasta	OR10X1	chr1	158573919	158584899
OR10X1_chr1_158573919_158584899	1/1	a0002	326	202	37	42	95	7	19	copy fasta	OR10X1	chr1	158573919	158584899
OR10X1_chr1_158573919_158584899	0/0	a0003	326	7	2	4	0	1	0	copy fasta	OR10X1	chr1	158573919	158584899
OR10X1_chr1_158573919_158584899	0/0	a0004	326	5	5	0	0	0	0	copy fasta	OR10X1	chr1	158573919	158584899
OR10X1_chr1_158573919_158584899	0/0	a0005	326	1	0	0	0	0	1	copy fasta	OR10X1	chr1	158573919	158584899
OR10X1_chr1_158573919_158584899	0/0	a0006	326	1	0	0	0	0	1	copy fasta	OR10X1	chr1	158573919	158584899
OR10X1_chr1_158573919_158584899	0/0	a0007	326	1	1	0	0	0	0	copy fasta	OR10X1	chr1	158573919	158584899
OR10X1_chr1_158573919_158584899	0/0	a0008	326	1	1	0	0	0	0	copy fasta	OR10X1	chr1	158573919	158584899
OR10Z1_chr1_158600268_158617514	1/1	a0001	313	303	70	50	131	11	39	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	a0002	313	122	10	27	73	4	8	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	a0003	313	13	13	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	a0004	313	4	0	3	0	1	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	a0005	152	3	3	0	0	0	0	copy fasta	OR10Z1	chr1	158600268	158617514
OR10Z1_chr1_158600268_158617514	0/0	a0006	313	1	0	0	0	0	1	copy fasta	OR10Z1	chr1	158600268	158617514
OR11A1_chr6_29420504_29462071	0/0	a0001	315	351	72	59	174	8	38	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/1	a0002	315	42	4	14	15	2	6	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	a0003	315	28	3	2	23	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	a0004	315	16	14	1	1	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	a0005	315	3	3	0	0	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11A1_chr6_29420504_29462071	0/0	a0006	315	1	0	0	1	0	0	copy fasta	OR11A1	chr6	29420504	29462071
OR11G2_chr14_20185896_20206075	0/0	a0001	268	182	18	27	108	10	19	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	1/0	a0002	311	148	18	34	71	6	18	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/1	a0003	268	78	37	15	13	2	10	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	a0004	311	34	3	2	29	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	a0005	311	14	12	2	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	a0006	268	8	0	0	8	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	a0007	311	6	1	3	1	0	1	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	a0008	124	6	5	1	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	a0009	192	2	2	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075