JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR11G2_chr14_20185896_20206075	0/0	a0010	311	2	0	0	2	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	a0011	311	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11G2_chr14_20185896_20206075	0/0	a0012	268	1	1	0	0	0	0	copy fasta	OR11G2	chr14	20185896	20206075
OR11H12_chr14_18596117_18607097	1/1	a0001	326	186	28	33	98	4	21	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	a0002	326	91	28	12	39	2	10	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	a0003	326	17	6	3	6	0	2	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	a0004	326	12	0	3	8	0	1	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	a0005	326	8	0	0	8	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	a0006	326	3	0	3	0	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	a0007	326	2	2	0	0	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	a0008	326	1	0	0	1	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	a0009	326	1	1	0	0	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	a0010	326	1	0	0	1	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	a0011	326	1	1	0	0	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	a0012	326	1	1	0	0	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	a0013	326	1	0	0	1	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H12_chr14_18596117_18607097	0/0	a0014	326	1	1	0	0	0	0	copy fasta	OR11H12	chr14	18596117	18607097
OR11H1_chr22_15523192_15534139	1/0	a0001	315	146	40	21	66	6	12	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	a0002	315	44	0	1	38	0	5	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	a0003	315	43	4	8	20	5	6	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	a0004	315	6	2	1	1	0	2	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	a0005	221	4	0	1	2	0	1	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	a0006	315	3	0	1	0	2	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	a0007	315	3	0	0	3	0	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	a0008	315	3	0	1	1	1	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	a0009	315	2	2	0	0	0	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	a0010	315	2	0	2	0	0	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	a0011	315	1	1	0	0	0	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	a0012	315	1	0	0	1	0	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	a0013	315	1	0	0	0	0	1	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	a0014	315	1	0	0	0	0	1	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	a0015	315	1	0	0	1	0	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	a0016	315	1	1	0	0	0	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H1_chr22_15523192_15534139	0/0	a0017	315	1	0	0	1	0	0	copy fasta	OR11H1	chr22	15523192	15534139
OR11H2_chr14_19707936_19718883	0/1	a0001	315	66	4	13	42	2	4	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	a0002	315	45	10	10	18	2	5	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	a0003	315	36	4	2	30	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	1/0	a0004	315	30	10	5	12	2	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	a0005	315	22	1	6	8	5	2	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	a0006	315	21	6	4	10	1	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	a0007	315	4	0	0	4	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	a0008	315	3	2	1	0	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	a0009	315	2	2	0	0	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	a0010	315	1	1	0	0	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	a0011	315	1	1	0	0	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	a0012	315	1	1	0	0	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	a0013	315	1	1	0	0	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	a0014	315	1	0	0	1	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	a0015	315	1	1	0	0	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	a0016	315	1	0	0	0	0	1	copy fasta	OR11H2	chr14	19707936	19718883