JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR11H2_chr14_19707936_19718883	0/0	a0017	315	1	0	0	1	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H2_chr14_19707936_19718883	0/0	a0018	315	1	0	1	0	0	0	copy fasta	OR11H2	chr14	19707936	19718883
OR11H4_chr14_20234286_20249349	1/0	a0001	314	410	74	68	212	13	42	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	a0002	314	23	2	11	2	5	3	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	a0003	46	2	2	0	0	0	0	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	a0004	314	2	2	0	0	0	0	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	a0005	314	1	0	1	0	0	0	copy fasta	OR11H4	chr14	20234286	20249349
OR11H4_chr14_20234286_20249349	0/0	a0006	314	1	0	0	0	0	1	copy fasta	OR11H4	chr14	20234286	20249349
OR11H6_chr14_20218710_20229702	1/0	a0001	330	221	10	48	137	5	20	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/0	a0002	330	132	39	21	53	8	11	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/0	a0003	330	45	13	3	15	1	13	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/0	a0004	330	36	22	5	6	0	3	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/1	a0005	330	8	1	3	1	2	0	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/0	a0006	330	2	2	0	0	0	0	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/0	a0007	330	2	0	0	1	0	1	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/0	a0008	330	1	0	1	0	0	0	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/0	a0009	330	1	1	0	0	0	0	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/0	a0010	310	1	0	1	0	0	0	copy fasta	OR11H6	chr14	20218710	20229702
OR11H6_chr14_20218710_20229702	0/0	a0011	330	1	0	0	1	0	0	copy fasta	OR11H6	chr14	20218710	20229702
OR11L1_chr1_247835928_247846896	0/1	a0001	322	355	71	76	149	15	43	copy fasta	OR11L1	chr1	247835928	247846896
OR11L1_chr1_247835928_247846896	1/0	a0002	322	27	15	8	1	0	2	copy fasta	OR11L1	chr1	247835928	247846896
OR11L1_chr1_247835928_247846896	0/0	a0003	322	6	6	0	0	0	0	copy fasta	OR11L1	chr1	247835928	247846896
OR11L1_chr1_247835928_247846896	0/0	a0004	322	2	0	0	0	0	2	copy fasta	OR11L1	chr1	247835928	247846896
OR11L1_chr1_247835928_247846896	0/0	a0005	322	1	0	0	0	1	0	copy fasta	OR11L1	chr1	247835928	247846896
OR11L1_chr1_247835928_247846896	0/0	a0006	322	1	0	0	1	0	0	copy fasta	OR11L1	chr1	247835928	247846896
OR11L1_chr1_247835928_247846896	0/0	a0007	322	1	0	0	1	0	0	copy fasta	OR11L1	chr1	247835928	247846896
OR11L1_chr1_247835928_247846896	0/0	a0008	322	1	0	0	0	0	1	copy fasta	OR11L1	chr1	247835928	247846896
OR12D2_chr6_29390631_29403008	0/0	a0001	307	302	67	54	138	9	34	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	a0002	307	63	11	7	39	1	5	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/1	a0003	307	59	8	8	32	1	9	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	a0004	307	13	0	7	6	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	a0005	307	6	0	3	0	3	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	a0006	307	2	1	1	0	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	a0007	307	2	2	0	0	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	a0008	307	2	2	0	0	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	a0009	307	2	2	0	0	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	a0010	307	1	1	0	0	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	a0011	307	1	1	0	0	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	a0012	307	1	1	0	0	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D2_chr6_29390631_29403008	0/0	a0013	307	1	0	0	1	0	0	copy fasta	OR12D2	chr6	29390631	29403008
OR12D3_chr6_29368423_29380291	0/1	a0001	316	354	83	68	153	11	38	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	a0002	316	57	14	6	33	0	4	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	a0003	316	21	0	4	16	1	0	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	a0004	316	2	0	0	0	0	2	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	a0005	316	1	0	0	1	0	0	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	a0006	250	1	0	0	1	0	0	copy fasta	OR12D3	chr6	29368423	29380291
OR12D3_chr6_29368423_29380291	0/0	a0007	316	1	1	0	0	0	0	copy fasta	OR12D3	chr6	29368423	29380291
OR13A1_chr10_45297650_45320608	0/0	a0000	0	8	3	5	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/1	a0001	328	385	69	67	194	16	38	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	a0002	328	13	13	0	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608