JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR13A1_chr10_45297650_45320608	0/0	a0003	328	5	5	0	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	a0004	328	3	3	0	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	a0005	328	2	1	1	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	a0006	328	1	0	0	1	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	a0007	328	1	1	0	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	a0008	328	1	1	0	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	a0009	328	1	0	0	1	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13A1_chr10_45297650_45320608	0/0	a0010	328	1	0	1	0	0	0	copy fasta	OR13A1	chr10	45297650	45320608
OR13C2_chr9_104599671_104610627	0/0	a0000	0	1	1	0	0	0	0	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	1/1	a0001	318	195	27	55	76	13	22	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	a0002	119	170	39	10	101	4	16	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	a0003	119	33	21	2	9	0	1	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	a0004	318	6	6	0	0	0	0	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	a0005	318	2	0	0	2	0	0	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	a0006	119	1	1	0	0	0	0	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	a0007	119	1	0	1	0	0	0	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	a0008	119	1	0	0	0	1	0	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	a0009	119	1	0	0	0	0	1	copy fasta	OR13C2	chr9	104599671	104610627
OR13C2_chr9_104599671_104610627	0/0	a0010	218	1	1	0	0	0	0	copy fasta	OR13C2	chr9	104599671	104610627
OR13C3_chr9_104530749_104541856	1/1	a0001	317	387	72	63	201	14	35	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	a0002	317	47	18	6	19	1	3	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	a0003	317	11	0	8	3	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	a0004	317	3	2	1	0	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	a0005	317	2	2	0	0	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	a0006	10	1	0	0	1	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	a0007	317	1	0	0	1	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	a0008	317	1	1	0	0	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	a0009	317	1	1	0	0	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	a0010	317	1	0	0	0	1	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C3_chr9_104530749_104541856	0/0	a0011	317	1	0	0	1	0	0	copy fasta	OR13C3	chr9	104530749	104541856
OR13C4_chr9_104521253_104532209	1/1	a0001	318	430	89	70	213	16	40	copy fasta	OR13C4	chr9	104521253	104532209
OR13C4_chr9_104521253_104532209	0/0	a0002	318	12	0	0	12	0	0	copy fasta	OR13C4	chr9	104521253	104532209
OR13C4_chr9_104521253_104532209	0/0	a0003	258	9	0	0	9	0	0	copy fasta	OR13C4	chr9	104521253	104532209
OR13C4_chr9_104521253_104532209	0/0	a0004	318	4	3	1	0	0	0	copy fasta	OR13C4	chr9	104521253	104532209
OR13C4_chr9_104521253_104532209	0/0	a0005	318	2	2	0	0	0	0	copy fasta	OR13C4	chr9	104521253	104532209
OR13C4_chr9_104521253_104532209	0/0	a0006	318	1	0	1	0	0	0	copy fasta	OR13C4	chr9	104521253	104532209
OR13C5_chr9_104593457_104604413	0/0	a0001	310	125	5	11	92	5	12	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	a0002	318	122	5	25	78	6	8	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	1/1	a0003	318	67	13	28	3	6	15	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	a0004	310	44	29	0	11	0	4	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	a0005	310	18	17	1	0	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	a0006	310	14	4	0	9	0	1	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	a0007	318	6	6	0	0	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	a0008	310	5	4	1	0	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	a0009	310	4	4	0	0	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	a0010	318	3	2	1	0	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	a0011	318	3	3	0	0	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	a0012	212	3	0	0	3	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	a0013	318	2	0	1	0	1	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	a0014	250	1	0	0	1	0	0	copy fasta	OR13C5	chr9	104593457	104604413