JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR13C5_chr9_104593457_104604413	0/0	a0015	318	1	1	0	0	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	a0016	318	1	0	0	1	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	a0017	318	1	0	0	1	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	a0018	318	1	0	0	1	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	a0019	318	1	0	0	1	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	a0020	310	1	1	0	0	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C5_chr9_104593457_104604413	0/0	a0021	310	1	0	0	1	0	0	copy fasta	OR13C5	chr9	104593457	104604413
OR13C8_chr9_104564168_104575130	0/0	a0001	320	304	49	43	183	6	23	copy fasta	OR13C8	chr9	104564168	104575130
OR13C8_chr9_104564168_104575130	1/1	a0002	320	108	37	30	16	6	17	copy fasta	OR13C8	chr9	104564168	104575130
OR13C8_chr9_104564168_104575130	0/0	a0003	8	9	0	0	9	0	0	copy fasta	OR13C8	chr9	104564168	104575130
OR13C8_chr9_104564168_104575130	0/0	a0004	320	5	4	1	0	0	0	copy fasta	OR13C8	chr9	104564168	104575130
OR13C8_chr9_104564168_104575130	0/0	a0005	320	4	0	0	4	0	0	copy fasta	OR13C8	chr9	104564168	104575130
OR13C8_chr9_104564168_104575130	0/0	a0006	320	1	1	0	0	0	0	copy fasta	OR13C8	chr9	104564168	104575130
OR13C8_chr9_104564168_104575130	0/0	a0007	320	1	1	0	0	0	0	copy fasta	OR13C8	chr9	104564168	104575130
OR13C9_chr9_104612248_104623204	0/0	a0001	318	161	35	10	94	5	17	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	0/0	a0002	318	113	5	27	66	7	8	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	1/1	a0003	318	83	22	30	5	6	18	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	0/0	a0004	318	26	16	1	8	0	1	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	0/0	a0005	318	8	0	0	8	0	0	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	0/0	a0006	318	6	5	1	0	0	0	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	0/0	a0007	318	5	5	0	0	0	0	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	0/0	a0008	318	4	3	1	0	0	0	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	0/0	a0009	318	2	2	0	0	0	0	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	0/0	a0010	318	1	1	0	0	0	0	copy fasta	OR13C9	chr9	104612248	104623204
OR13C9_chr9_104612248_104623204	0/0	a0011	318	1	0	0	1	0	0	copy fasta	OR13C9	chr9	104612248	104623204
OR13D1_chr9_104689518_104700462	0/0	a0001	314	177	55	30	80	6	6	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	a0002	314	134	17	18	81	3	15	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	1/1	a0003	314	56	13	22	2	5	12	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	a0004	314	7	0	3	0	0	4	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	a0005	268	6	5	1	0	0	0	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	a0006	314	3	3	0	0	0	0	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	a0007	314	3	3	0	0	0	0	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	a0008	314	2	2	0	0	0	0	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	a0009	314	2	0	0	2	0	0	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	a0010	314	1	1	0	0	0	0	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	a0011	314	1	0	0	0	0	1	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	a0012	314	1	0	0	0	0	1	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	a0013	314	1	0	0	1	0	0	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	a0014	316	1	0	0	0	0	1	copy fasta	OR13D1	chr9	104689518	104700462
OR13D1_chr9_104689518_104700462	0/0	a0015	314	1	1	0	0	0	0	copy fasta	OR13D1	chr9	104689518	104700462
OR13F1_chr9_104499263_104510222	0/1	a0001	319	175	43	36	66	8	21	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	a0002	319	139	37	13	82	0	7	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	1/0	a0003	319	92	4	21	50	6	10	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	a0004	319	8	0	0	8	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	a0005	319	8	5	3	0	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	a0006	319	7	2	3	2	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	a0007	319	2	0	0	0	0	2	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	a0008	319	1	1	0	0	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	a0009	319	1	0	0	1	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	a0010	319	1	1	0	0	0	0	copy fasta	OR13F1	chr9	104499263	104510222