JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR13F1_chr9_104499263_104510222	0/0	a0011	319	1	0	0	1	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	a0012	319	1	0	0	1	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	a0013	319	1	0	0	0	1	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	a0014	319	1	1	0	0	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	a0015	319	1	0	0	1	0	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13F1_chr9_104499263_104510222	0/0	a0016	319	1	0	0	0	1	0	copy fasta	OR13F1	chr9	104499263	104510222
OR13G1_chr1_247665812_247684739	0/1	a0001	307	182	12	39	103	7	20	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	a0002	307	128	22	13	71	4	18	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	1/0	a0003	307	66	36	14	6	4	5	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	a0004	307	10	9	1	0	0	0	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	a0005	307	9	0	5	0	3	1	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	a0006	307	7	0	0	7	0	0	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	a0007	307	6	6	0	0	0	0	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	a0008	307	3	3	0	0	0	0	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	a0009	307	2	0	0	2	0	0	copy fasta	OR13G1	chr1	247665812	247684739
OR13G1_chr1_247665812_247684739	0/0	a0010	307	1	0	0	1	0	0	copy fasta	OR13G1	chr1	247665812	247684739
OR13H1_chrX_131539074_131550000	0/0	a0001	308	215	66	29	84	9	27	copy fasta	OR13H1	chrX	131539074	131550000
OR13H1_chrX_131539074_131550000	1/1	a0002	308	103	12	26	54	4	5	copy fasta	OR13H1	chrX	131539074	131550000
OR13H1_chrX_131539074_131550000	0/0	a0003	308	1	0	0	1	0	0	copy fasta	OR13H1	chrX	131539074	131550000
OR13H1_chrX_131539074_131550000	0/0	a0004	308	1	0	0	1	0	0	copy fasta	OR13H1	chrX	131539074	131550000
OR13J1_chr9_35864463_35875401	0/0	a0001	312	295	71	45	145	9	25	copy fasta	OR13J1	chr9	35864463	35875401
OR13J1_chr9_35864463_35875401	1/1	a0002	312	164	20	35	83	7	17	copy fasta	OR13J1	chr9	35864463	35875401
OR13J1_chr9_35864463_35875401	0/0	a0003	312	2	1	1	0	0	0	copy fasta	OR13J1	chr9	35864463	35875401
OR13J1_chr9_35864463_35875401	0/0	a0004	256	1	0	1	0	0	0	copy fasta	OR13J1	chr9	35864463	35875401
OR14A16_chr1_247809660_247829119	0/1	a0001	308	244	19	65	113	12	34	copy fasta	OR14A16	chr1	247809660	247829119
OR14A16_chr1_247809660_247829119	0/0	a0002	309	65	52	9	1	2	1	copy fasta	OR14A16	chr1	247809660	247829119
OR14A16_chr1_247809660_247829119	0/0	a0003	309	13	4	0	8	0	1	copy fasta	OR14A16	chr1	247809660	247829119
OR14A16_chr1_247809660_247829119	0/0	a0004	309	11	8	3	0	0	0	copy fasta	OR14A16	chr1	247809660	247829119
OR14A16_chr1_247809660_247829119	0/0	a0005	309	8	7	1	0	0	0	copy fasta	OR14A16	chr1	247809660	247829119
OR14A16_chr1_247809660_247829119	1/0	a0006	309	1	0	0	0	0	0	copy fasta	OR14A16	chr1	247809660	247829119
OR14A2_chr1_247717957_247753141	1/1	a0001	314	279	48	42	145	13	29	copy fasta	OR14A2	chr1	247717957	247753141
OR14A2_chr1_247717957_247753141	0/0	a0002	314	26	12	4	9	0	1	copy fasta	OR14A2	chr1	247717957	247753141
OR14A2_chr1_247717957_247753141	0/0	a0003	314	21	17	4	0	0	0	copy fasta	OR14A2	chr1	247717957	247753141
OR14A2_chr1_247717957_247753141	0/0	a0004	314	10	5	4	0	0	1	copy fasta	OR14A2	chr1	247717957	247753141
OR14A2_chr1_247717957_247753141	0/0	a0005	314	5	0	3	0	1	1	copy fasta	OR14A2	chr1	247717957	247753141
OR14A2_chr1_247717957_247753141	0/0	a0006	314	4	4	0	0	0	0	copy fasta	OR14A2	chr1	247717957	247753141
OR14A2_chr1_247717957_247753141	0/0	a0007	314	3	0	3	0	0	0	copy fasta	OR14A2	chr1	247717957	247753141
OR14C36_chr1_248343775_248354713	0/0	a0001	312	189	26	33	99	8	23	copy fasta	OR14C36	chr1	248343775	248354713
OR14C36_chr1_248343775_248354713	1/0	a0002	312	127	55	20	45	4	2	copy fasta	OR14C36	chr1	248343775	248354713
OR14C36_chr1_248343775_248354713	0/1	a0003	312	106	8	19	61	4	13	copy fasta	OR14C36	chr1	248343775	248354713
OR14C36_chr1_248343775_248354713	0/0	a0004	287	13	0	0	13	0	0	copy fasta	OR14C36	chr1	248343775	248354713
OR14C36_chr1_248343775_248354713	0/0	a0005	312	8	7	1	0	0	0	copy fasta	OR14C36	chr1	248343775	248354713
OR14C36_chr1_248343775_248354713	0/0	a0006	312	2	0	2	0	0	0	copy fasta	OR14C36	chr1	248343775	248354713
OR14C36_chr1_248343775_248354713	0/0	a0007	312	1	1	0	0	0	0	copy fasta	OR14C36	chr1	248343775	248354713
OR14C36_chr1_248343775_248354713	0/0	a0008	312	1	1	0	0	0	0	copy fasta	OR14C36	chr1	248343775	248354713
OR14C36_chr1_248343775_248354713	0/0	a0009	312	1	0	1	0	0	0	copy fasta	OR14C36	chr1	248343775	248354713
OR14J1_chr6_29296701_29318017	0/1	a0001	321	294	67	43	149	9	25	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	a0002	321	149	27	33	69	5	15	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	a0003	321	2	0	0	2	0	0	copy fasta	OR14J1	chr6	29296701	29318017
OR14J1_chr6_29296701_29318017	0/0	a0004	321	1	0	0	0	0	1	copy fasta	OR14J1	chr6	29296701	29318017