JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR14J1_chr6_29296701_29318017	0/0	a0005	321	1	0	0	0	0	1	copy fasta	OR14J1	chr6	29296701	29318017
OR14K1_chr1_247733615_247744559	1/1	a0001	314	376	71	70	181	16	36	copy fasta	OR14K1	chr1	247733615	247744559
OR14K1_chr1_247733615_247744559	0/0	a0002	314	7	5	2	0	0	0	copy fasta	OR14K1	chr1	247733615	247744559
OR14K1_chr1_247733615_247744559	0/0	a0003	314	2	2	0	0	0	0	copy fasta	OR14K1	chr1	247733615	247744559
OR14K1_chr1_247733615_247744559	0/0	a0004	314	2	2	0	0	0	0	copy fasta	OR14K1	chr1	247733615	247744559
OR14K1_chr1_247733615_247744559	0/0	a0005	314	1	0	0	1	0	0	copy fasta	OR14K1	chr1	247733615	247744559
OR14K1_chr1_247733615_247744559	0/0	a0006	314	1	0	0	1	0	0	copy fasta	OR14K1	chr1	247733615	247744559
OR14K1_chr1_247733615_247744559	0/0	a0007	314	1	0	0	1	0	0	copy fasta	OR14K1	chr1	247733615	247744559
OR14K1_chr1_247733615_247744559	0/0	a0008	314	1	0	0	1	0	0	copy fasta	OR14K1	chr1	247733615	247744559
OR14K1_chr1_247733615_247744559	0/0	a0009	314	1	0	0	1	0	0	copy fasta	OR14K1	chr1	247733615	247744559
OR14L1_chr1_247612143_247627372	1/1	a0001	325	399	60	81	191	18	47	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	a0002	325	17	15	2	0	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	a0003	248	9	8	1	0	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	a0004	325	3	3	0	0	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	a0005	325	2	0	0	2	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	a0006	248	2	2	0	0	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	a0007	325	1	0	0	1	0	0	copy fasta	OR14L1	chr1	247612143	247627372
OR14L1_chr1_247612143_247627372	0/0	a0008	325	1	0	0	0	0	1	copy fasta	OR14L1	chr1	247612143	247627372
OR1A1_chr17_3202667_3223896	1/0	a0001	309	262	41	28	167	9	16	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/1	a0002	309	118	24	34	32	5	22	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	a0003	309	21	0	11	0	2	8	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	a0004	309	17	16	1	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	a0005	309	10	10	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	a0006	309	4	0	0	4	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	a0007	121	1	0	0	1	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A1_chr17_3202667_3223896	0/0	a0008	309	1	1	0	0	0	0	copy fasta	OR1A1	chr17	3202667	3223896
OR1A2_chr17_3192519_3203448	1/1	a0001	309	221	41	45	99	6	28	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	0/0	a0002	309	125	2	18	89	5	11	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	0/0	a0003	309	47	20	15	0	3	9	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	0/0	a0004	309	14	13	1	0	0	0	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	0/0	a0005	309	9	0	0	9	0	0	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	0/0	a0006	309	6	5	1	0	0	0	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	0/0	a0007	47	4	4	0	0	0	0	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	0/0	a0008	309	2	2	0	0	0	0	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	0/0	a0009	309	1	0	0	1	0	0	copy fasta	OR1A2	chr17	3192519	3203448
OR1A2_chr17_3192519_3203448	0/0	a0010	22	1	1	0	0	0	0	copy fasta	OR1A2	chr17	3192519	3203448
OR1B1_chr9_122623125_122662627	0/1	a0001	21	157	26	21	79	7	23	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	a0002	190	89	3	20	47	4	15	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	a0003	190	66	0	10	48	1	7	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	1/0	a0004	317	62	29	16	9	4	3	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	a0005	317	34	19	11	4	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	a0006	190	6	0	0	6	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	a0007	317	3	3	0	0	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	a0008	21	1	1	0	0	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	a0009	317	1	0	0	1	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1B1_chr9_122623125_122662627	0/0	a0010	317	1	1	0	0	0	0	copy fasta	OR1B1	chr9	122623125	122662627
OR1C1_chr1_247749846_247765556	1/1	a0001	314	433	79	83	206	18	45	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	a0002	314	5	5	0	0	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	a0003	314	2	2	0	0	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	a0004	314	1	0	0	1	0	0	copy fasta	OR1C1	chr1	247749846	247765556