JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR1C1_chr1_247749846_247765556	0/0	a0005	314	1	0	1	0	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	a0006	314	1	0	0	0	0	1	copy fasta	OR1C1	chr1	247749846	247765556
OR1C1_chr1_247749846_247765556	0/0	a0007	314	1	0	0	1	0	0	copy fasta	OR1C1	chr1	247749846	247765556
OR1D2_chr17_3083484_3109422	1/1	a0001	312	297	37	55	156	12	35	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	a0002	312	41	23	12	4	0	2	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	a0003	312	30	16	4	1	4	5	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	a0004	312	10	8	1	0	0	1	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	a0005	312	8	8	0	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	a0006	312	3	3	0	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	a0007	312	2	0	0	2	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	a0008	312	1	0	0	0	0	1	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	a0009	312	1	1	0	0	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D2_chr17_3083484_3109422	0/0	a0010	312	1	0	0	1	0	0	copy fasta	OR1D2	chr17	3083484	3109422
OR1D5_chr17_3057669_3068607	0/1	a0001	312	212	14	40	124	10	23	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	1/0	a0002	312	181	39	37	74	6	24	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	a0003	312	16	15	1	0	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	a0004	312	9	8	1	0	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	a0005	135	9	8	1	0	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	a0006	312	5	5	0	0	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	a0007	312	3	1	0	0	0	2	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	a0008	312	2	0	0	2	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	a0009	171	1	0	0	0	0	1	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	a0010	171	1	0	0	1	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	a0011	312	1	1	0	0	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	a0012	312	1	0	0	1	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	a0013	312	1	1	0	0	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	a0014	312	1	0	0	1	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1D5_chr17_3057669_3068607	0/0	a0015	312	1	0	0	1	0	0	copy fasta	OR1D5	chr17	3057669	3068607
OR1E1_chr17_3392104_3403410	1/0	a0001	314	363	83	52	174	14	39	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	a0002	314	6	1	0	5	0	0	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	a0003	314	3	0	0	3	0	0	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	a0004	314	2	0	0	0	0	2	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	a0005	314	2	1	1	0	0	0	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	a0006	314	2	0	1	0	0	1	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/1	a0007	49	1	0	0	0	0	0	copy fasta	OR1E1	chr17	3392104	3403410
OR1E1_chr17_3392104_3403410	0/0	a0008	314	1	1	0	0	0	0	copy fasta	OR1E1	chr17	3392104	3403410
OR1E2_chr17_3427870_3438841	0/0	a0001	323	297	50	57	148	11	31	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	1/0	a0002	323	114	24	16	53	5	15	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	0/1	a0003	274	10	9	0	0	0	0	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	0/0	a0004	323	9	9	0	0	0	0	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	0/0	a0005	323	7	0	0	7	0	0	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	0/0	a0006	314	4	3	1	0	0	0	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	0/0	a0007	323	3	3	0	0	0	0	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	0/0	a0008	323	2	0	0	0	0	2	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	0/0	a0009	323	1	1	0	0	0	0	copy fasta	OR1E2	chr17	3427870	3438841
OR1E2_chr17_3427870_3438841	0/0	a0010	323	1	1	0	0	0	0	copy fasta	OR1E2	chr17	3427870	3438841
OR1F1_chr16_3183204_3211556	1/1	a0001	312	155	51	22	56	8	16	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	a0002	312	132	10	29	67	4	22	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	a0003	312	13	11	2	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	a0004	312	11	10	1	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556