JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR1F1_chr16_3183204_3211556	0/0	a0005	312	7	7	0	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	a0006	312	4	3	1	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	a0007	312	3	0	1	0	2	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	a0008	312	1	0	1	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	a0009	312	1	0	0	1	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1F1_chr16_3183204_3211556	0/0	a0010	312	1	0	1	0	0	0	copy fasta	OR1F1	chr16	3183204	3211556
OR1G1_chr17_3121610_3132551	1/1	a0001	313	381	74	67	174	15	49	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	a0002	313	17	16	1	0	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	a0003	313	9	0	0	9	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	a0004	313	6	6	0	0	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	a0005	313	1	0	0	1	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	a0006	313	1	0	0	1	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	a0007	313	1	0	0	0	0	1	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	a0008	313	1	0	0	0	1	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1G1_chr17_3121610_3132551	0/0	a0009	313	1	0	0	1	0	0	copy fasta	OR1G1	chr17	3121610	3132551
OR1I1_chr19_15077211_15097970	0/1	a0001	355	185	31	45	73	8	27	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	1/0	a0002	355	153	59	17	66	7	3	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	a0003	355	84	0	15	54	1	14	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	a0004	355	15	1	0	14	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	a0005	355	7	6	1	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	a0006	355	4	2	2	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	a0007	355	3	0	0	3	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	a0008	355	2	0	0	2	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	a0009	355	1	0	0	0	0	1	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	a0010	355	1	1	0	0	0	0	copy fasta	OR1I1	chr19	15077211	15097970
OR1I1_chr19_15077211_15097970	0/0	a0011	355	1	0	0	0	0	1	copy fasta	OR1I1	chr19	15077211	15097970
OR1J1_chr9_122471958_122482926	0/0	a0001	322	312	71	38	164	9	30	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	1/1	a0002	322	124	18	40	42	6	16	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	0/0	a0003	322	22	2	0	20	0	0	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	0/0	a0004	322	4	3	1	0	0	0	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	0/0	a0005	322	2	2	0	0	0	0	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	0/0	a0006	322	2	1	1	0	0	0	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	0/0	a0007	322	2	0	1	0	0	1	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	0/0	a0008	322	1	0	0	0	0	1	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	0/0	a0009	234	1	0	0	0	1	0	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	0/0	a0010	322	1	1	0	0	0	0	copy fasta	OR1J1	chr9	122471958	122482926
OR1J1_chr9_122471958_122482926	0/0	a0011	322	1	0	1	0	0	0	copy fasta	OR1J1	chr9	122471958	122482926
OR1J2_chr9_122505802_122516743	1/1	a0001	313	283	71	69	100	12	29	copy fasta	OR1J2	chr9	122505802	122516743
OR1J2_chr9_122505802_122516743	0/0	a0002	313	99	7	1	85	1	5	copy fasta	OR1J2	chr9	122505802	122516743
OR1J2_chr9_122505802_122516743	0/0	a0003	313	63	1	3	44	5	10	copy fasta	OR1J2	chr9	122505802	122516743
OR1J2_chr9_122505802_122516743	0/0	a0004	108	15	8	4	1	0	2	copy fasta	OR1J2	chr9	122505802	122516743
OR1J2_chr9_122505802_122516743	0/0	a0005	313	5	4	1	0	0	0	copy fasta	OR1J2	chr9	122505802	122516743
OR1J2_chr9_122505802_122516743	0/0	a0006	313	2	2	0	0	0	0	copy fasta	OR1J2	chr9	122505802	122516743
OR1J2_chr9_122505802_122516743	0/0	a0007	313	1	1	0	0	0	0	copy fasta	OR1J2	chr9	122505802	122516743
OR1J4_chr9_122514141_122525082	1/1	a0001	313	429	87	75	208	18	39	copy fasta	OR1J4	chr9	122514141	122525082
OR1J4_chr9_122514141_122525082	0/0	a0002	313	2	0	2	0	0	0	copy fasta	OR1J4	chr9	122514141	122525082
OR1J4_chr9_122514141_122525082	0/0	a0003	313	2	0	0	2	0	0	copy fasta	OR1J4	chr9	122514141	122525082
OR1J4_chr9_122514141_122525082	0/0	a0004	313	1	1	0	0	0	0	copy fasta	OR1J4	chr9	122514141	122525082
OR1J4_chr9_122514141_122525082	0/0	a0005	313	1	0	0	1	0	0	copy fasta	OR1J4	chr9	122514141	122525082
OR1J4_chr9_122514141_122525082	0/0	a0006	313	1	1	0	0	0	0	copy fasta	OR1J4	chr9	122514141	122525082