JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR1J4_chr9_122514141_122525082	0/0	a0007	313	1	0	1	0	0	0	copy fasta	OR1J4	chr9	122514141	122525082
OR1J4_chr9_122514141_122525082	0/0	a0008	313	1	1	0	0	0	0	copy fasta	OR1J4	chr9	122514141	122525082
OR1J4_chr9_122514141_122525082	0/0	a0009	313	1	0	0	1	0	0	copy fasta	OR1J4	chr9	122514141	122525082
OR1J4_chr9_122514141_122525082	0/0	a0010	313	1	0	0	0	0	1	copy fasta	OR1J4	chr9	122514141	122525082
OR1K1_chr9_122795123_122806073	1/1	a0001	316	365	80	61	170	12	40	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	a0002	316	40	16	2	13	1	8	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	a0003	316	6	0	5	0	0	1	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	a0004	316	3	0	3	0	0	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	a0005	316	2	0	0	1	1	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	a0006	316	1	1	0	0	0	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	a0007	316	1	0	0	0	0	1	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	a0008	316	1	0	0	1	0	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	a0009	316	1	0	0	1	0	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	a0010	316	1	0	1	0	0	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	a0011	316	1	1	0	0	0	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	a0012	316	1	0	1	0	0	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1K1_chr9_122795123_122806073	0/0	a0013	316	1	0	1	0	0	0	copy fasta	OR1K1	chr9	122795123	122806073
OR1L1_chr9_122656716_122667648	1/1	a0001	310	357	32	77	181	18	47	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	a0002	310	40	15	0	24	0	1	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	a0003	310	22	21	1	0	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	a0004	310	11	10	1	0	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	a0005	310	7	7	0	0	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	a0006	310	6	5	1	0	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	a0007	310	5	5	0	0	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	a0008	310	1	0	1	0	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	a0009	310	1	1	0	0	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	a0010	99	1	0	0	1	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	a0011	310	1	0	1	0	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	a0012	310	1	0	0	1	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L1_chr9_122656716_122667648	0/0	a0013	310	1	0	0	1	0	0	copy fasta	OR1L1	chr9	122656716	122667648
OR1L3_chr9_122670130_122681104	1/1	a0001	324	308	46	69	132	15	44	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	a0002	324	42	17	1	24	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	a0003	324	14	13	1	0	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	a0004	324	4	0	0	3	1	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	a0005	324	3	3	0	0	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	a0006	324	3	3	0	0	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	a0007	324	1	1	0	0	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	a0008	324	1	1	0	0	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	a0009	324	1	0	0	1	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	a0010	324	1	1	0	0	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	a0011	324	1	1	0	0	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L3_chr9_122670130_122681104	0/0	a0012	88	1	0	1	0	0	0	copy fasta	OR1L3	chr9	122670130	122681104
OR1L4_chr9_122718990_122729925	0/1	a0001	311	272	36	52	135	12	36	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	1/0	a0002	311	73	43	4	23	1	1	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	a0003	311	7	2	1	0	3	1	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	a0004	311	3	1	2	0	0	0	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	a0005	311	2	1	1	0	0	0	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	a0006	311	2	2	0	0	0	0	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	a0007	311	1	1	0	0	0	0	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	a0008	311	1	0	0	1	0	0	copy fasta	OR1L4	chr9	122718990	122729925