JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR1L4_chr9_122718990_122729925	0/0	a0009	311	1	0	0	1	0	0	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	a0010	311	1	1	0	0	0	0	copy fasta	OR1L4	chr9	122718990	122729925
OR1L4_chr9_122718990_122729925	0/0	a0011	311	1	1	0	0	0	0	copy fasta	OR1L4	chr9	122718990	122729925
OR1L6_chr9_122737303_122755783	0/1	a0001	311	292	50	60	138	12	31	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	1/0	a0002	311	28	23	3	0	1	0	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	a0003	311	7	7	0	0	0	0	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	a0004	311	4	0	0	0	0	4	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	a0005	311	3	3	0	0	0	0	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	a0006	311	3	3	0	0	0	0	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	a0007	311	3	0	2	0	0	1	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	a0008	311	2	0	0	0	1	1	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	a0009	311	2	0	1	0	0	1	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	a0010	311	2	1	1	0	0	0	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	a0011	311	1	0	1	0	0	0	copy fasta	OR1L6	chr9	122737303	122755783
OR1L6_chr9_122737303_122755783	0/0	a0012	311	1	1	0	0	0	0	copy fasta	OR1L6	chr9	122737303	122755783
OR1L8_chr9_122562117_122588384	0/1	a0001	309	318	47	44	195	8	23	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	1/0	a0002	309	76	20	33	2	6	14	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	a0003	309	17	14	2	1	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	a0004	309	9	8	1	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	a0005	309	8	0	0	8	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	a0006	309	3	1	1	0	0	1	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	a0007	309	3	3	0	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1L8_chr9_122562117_122588384	0/0	a0008	309	2	1	1	0	0	0	copy fasta	OR1L8	chr9	122562117	122588384
OR1M1_chr19_9082061_9100669	1/1	a0001	313	419	78	78	196	16	49	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	a0002	313	4	4	0	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	a0003	313	4	4	0	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	a0004	313	4	4	0	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	a0005	313	2	0	0	2	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	a0006	313	1	0	0	0	0	1	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	a0007	313	1	1	0	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1M1_chr19_9082061_9100669	0/0	a0008	313	1	1	0	0	0	0	copy fasta	OR1M1	chr19	9082061	9100669
OR1N1_chr9_122521358_122532293	0/0	a0001	311	263	66	50	116	10	21	copy fasta	OR1N1	chr9	122521358	122532293
OR1N1_chr9_122521358_122532293	0/0	a0002	311	98	8	1	82	1	6	copy fasta	OR1N1	chr9	122521358	122532293
OR1N1_chr9_122521358_122532293	1/1	a0003	311	87	14	27	24	7	13	copy fasta	OR1N1	chr9	122521358	122532293
OR1N1_chr9_122521358_122532293	0/0	a0004	311	2	2	0	0	0	0	copy fasta	OR1N1	chr9	122521358	122532293
OR1N1_chr9_122521358_122532293	0/0	a0005	311	1	0	0	1	0	0	copy fasta	OR1N1	chr9	122521358	122532293
OR1N1_chr9_122521358_122532293	0/0	a0006	311	1	0	0	1	0	0	copy fasta	OR1N1	chr9	122521358	122532293
OR1N2_chr9_122548112_122559214	0/1	a0001	316	242	57	44	111	7	22	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	a0002	316	83	1	2	76	1	3	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	1/0	a0003	316	41	10	19	0	5	6	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	a0004	316	40	13	9	8	3	7	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	a0005	316	11	5	5	0	0	1	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	a0006	316	8	6	1	1	0	0	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	a0007	316	6	2	0	3	0	1	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	a0008	316	3	3	0	0	0	0	copy fasta	OR1N2	chr9	122548112	122559214
OR1N2_chr9_122548112_122559214	0/0	a0009	316	2	1	0	1	0	0	copy fasta	OR1N2	chr9	122548112	122559214
OR1Q1_chr9_122609738_122620682	0/1	a0001	314	283	52	44	145	7	34	copy fasta	OR1Q1	chr9	122609738	122620682
OR1Q1_chr9_122609738_122620682	0/0	a0002	314	73	0	7	56	1	9	copy fasta	OR1Q1	chr9	122609738	122620682
OR1Q1_chr9_122609738_122620682	1/0	a0003	314	60	36	8	12	1	2	copy fasta	OR1Q1	chr9	122609738	122620682
OR1Q1_chr9_122609738_122620682	0/0	a0004	314	16	5	9	0	1	1	copy fasta	OR1Q1	chr9	122609738	122620682