JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
OR1Q1_chr9_122609738_122620682	0/0	a0005	314	6	0	6	0	0	0	copy fasta	OR1Q1	chr9	122609738	122620682
OR1Q1_chr9_122609738_122620682	0/0	a0006	314	3	3	0	0	0	0	copy fasta	OR1Q1	chr9	122609738	122620682
OR1Q1_chr9_122609738_122620682	0/0	a0007	314	1	0	0	1	0	0	copy fasta	OR1Q1	chr9	122609738	122620682
OR1Q1_chr9_122609738_122620682	0/0	a0008	314	1	0	0	1	0	0	copy fasta	OR1Q1	chr9	122609738	122620682
OR1Q1_chr9_122609738_122620682	0/0	a0009	314	1	0	0	1	0	0	copy fasta	OR1Q1	chr9	122609738	122620682
OR1R1P_chr17_3380930_3391874	0/0	a0001	52	201	28	39	105	7	22	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	0/0	a0002	314	133	21	8	94	1	9	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	1/0	a0003	314	64	21	21	0	6	15	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	0/0	a0004	314	7	7	0	0	0	0	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	0/0	a0005	316	4	4	0	0	0	0	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	0/0	a0006	314	3	3	0	0	0	0	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	0/0	a0007	314	3	2	0	1	0	0	copy fasta	OR1R1P	chr17	3380930	3391874
OR1R1P_chr17_3380930_3391874	0/1	a0008	314	1	0	0	0	0	0	copy fasta	OR1R1P	chr17	3380930	3391874
OR1S1_chr11_58207720_58221084	0/0	a0000	0	226	23	36	140	6	21	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	1/0	a0001	312	132	56	19	41	4	11	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/1	a0002	312	58	3	16	28	4	6	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	a0003	312	34	8	11	7	2	6	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	a0004	312	2	1	1	0	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	a0005	312	2	1	1	0	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	a0006	312	1	1	0	0	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	a0007	312	1	0	1	0	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	a0008	312	1	0	1	0	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	a0009	312	1	0	0	1	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	a0010	312	1	0	0	1	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S1_chr11_58207720_58221084	0/0	a0011	312	1	1	0	0	0	0	copy fasta	OR1S1	chr11	58207720	58221084
OR1S2_chr11_58198204_58209142	1/1	a0001	312	378	78	69	179	12	38	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	a0002	312	28	2	11	8	2	5	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	a0003	312	6	0	0	6	0	0	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	a0004	312	6	6	0	0	0	0	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	a0005	312	2	0	2	0	0	0	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	a0006	312	1	0	0	1	0	0	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	a0007	301	1	0	0	0	0	1	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	a0008	312	1	1	0	0	0	0	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	a0009	312	1	0	0	1	0	0	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	a0010	312	1	1	0	0	0	0	copy fasta	OR1S2	chr11	58198204	58209142
OR1S2_chr11_58198204_58209142	0/0	a0011	312	1	0	0	1	0	0	copy fasta	OR1S2	chr11	58198204	58209142
OR2A12_chr7_144081278_144103953	1/1	a0001	310	351	63	57	174	13	42	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	a0002	310	28	21	4	0	3	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	a0003	310	4	3	1	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	a0004	310	3	0	0	3	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	a0005	310	2	2	0	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	a0006	310	1	0	0	1	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A12_chr7_144081278_144103953	0/0	a0007	310	1	1	0	0	0	0	copy fasta	OR2A12	chr7	144081278	144103953
OR2A14_chr7_144118176_144136188	0/1	a0001	309	263	44	38	151	8	21	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	1/0	a0002	310	126	17	20	55	8	25	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	a0003	310	25	23	2	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	a0004	310	5	5	0	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	a0005	309	4	3	1	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	a0006	309	1	0	1	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188
OR2A14_chr7_144118176_144136188	0/0	a0007	310	1	1	0	0	0	0	copy fasta	OR2A14	chr7	144118176	144136188