Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ARHGAP45_chr19_1062167_1091628	0/0	a0016	1138	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0017	1136	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0018	1136	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0019	1136	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0020	1136	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0021	1136	1	0	1	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0022	1136	1	0	0	1	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0023	1136	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP45_chr19_1062167_1091628	0/0	a0024	1136	1	1	0	0	0	0	copy fasta	ARHGAP45	chr19	1062167	1091628
ARHGAP4_chrX_153902378_153931264	1/1	a0001	946	285	72	47	126	11	27	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	a0002	946	6	5	1	0	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	a0003	946	5	0	1	0	0	4	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	a0004	946	2	0	0	2	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	a0005	15	1	0	0	1	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	a0006	208	1	0	0	1	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	a0007	580	1	0	0	1	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	a0008	730	1	0	0	1	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	a0009	939	1	0	0	1	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	a0010	843	1	0	0	1	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	a0011	946	1	1	0	0	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	a0012	946	1	0	0	0	0	1	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	a0013	119	1	0	1	0	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP4_chrX_153902378_153931264	0/0	a0014	121	1	0	0	1	0	0	copy fasta	ARHGAP4	chrX	153902378	153931264
ARHGAP5_chr14_32072304_32164728	1/1	a0001	1502	169	55	37	38	8	29	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	a0002	1502	3	3	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	a0003	1502	3	3	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	a0004	1502	1	0	0	0	0	1	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	a0005	1502	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	a0006	1502	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	a0007	1502	1	0	1	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	a0008	1502	1	0	0	0	1	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	a0009	1502	1	0	0	1	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	a0010	1502	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	a0011	1502	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	a0012	1502	1	0	0	1	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	a0013	1502	1	1	0	0	0	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP5_chr14_32072304_32164728	0/0	a0014	1502	1	0	0	0	1	0	copy fasta	ARHGAP5	chr14	32072304	32164728
ARHGAP6_chrX_11132544_11670920	0/0	a0001	974	126	29	19	64	3	11	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	a0002	974	15	7	1	1	2	4	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	a0003	974	1	1	0	0	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	a0004	974	1	1	0	0	0	0	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP6_chrX_11132544_11670920	0/0	a0005	534	1	0	0	0	0	1	copy fasta	ARHGAP6	chrX	11132544	11670920
ARHGAP8_chr22_44747575_44867784	1/0	a0001	433	147	34	36	50	7	19	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0002	433	97	27	7	50	2	11	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/1	a0003	433	80	4	12	47	5	11	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0004	433	11	0	0	10	0	1	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0005	433	8	7	1	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0006	433	6	6	0	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0007	433	6	5	1	0	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	a0008	433	6	1	2	0	2	1	copy fasta	ARHGAP8	chr22	44747575	44867784